SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene199988

Length: 180 nt

UniGene Fasta

>sp_v3.0_unigene199988
AAGGGATACAAACCAAACCAAGTTACTGGAGCCGAAGTTGCTGAAGTCAAGGTTGCTGCCCCAAGCTCTTTCGATTGGAGAAAGAAGAACGGTATCACCGCCATCAAGGATCAAGGACAATGTGGATCATGCTGGGCTTTCTCTTGCACTGAAAGCATCGAATCTGTTTACATGATCAAG

Ace file of the UniGene sp_v3.0_unigene199988

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cathepsin L n=1 Tax=Stylonychia lemnae RepID=Q9NH99_STYLE	-	-	5.0e-11	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G54940.2	Papain family cysteine protease chr3:20354402-20356127 FORWARD LENGTH=367	2.0e-12	50%
RefSeq	Arabidopsis thaliana	NP_567010.5	Papain family cysteine protease [Arabidopsis thaliana]	2.0e-12	50%
RefSeq	Populus trichocarpa	XP_002321654.1	predicted protein [Populus trichocarpa]	3.0e-13	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P285

Fln msg: Distance to subject end: 185 aas, your sequence is shorter than subject: 60 - 367

Fln protein: KGYKPNQVTGAEVAEVKVAAPSSFDWRKKNGITAIKDQGQCGSCWAFSCTESIESVYMIK

Protein Length: 61

Fln nts: AAGGGATACAAACCAAACCAAGTTACTGGAGCCGAAGTTGCTGAAGTCAAGGTTGCTGCCCCAAGCTCTTTCGATTGGAGAAAGAAGAACGGTATCACCGCCATCAAGGATCAAGGACAATGTGGATCATGCTGGGCTTTCTCTTGCACTGAAAGCATCGAATCTGTTTACATGATCAAG

Fln Alignment:

AllPine_b_c42613___QVTGAEVAEVKVAAPSSFDWRKKNGITAIKDQGQCGSCWAFSCTESIESVYMI
A9P285________________QTVGSQSSSCSIA--SSLDWRKKGAVTGVKDQAQCGSCWAFSTTGAIEGVNFI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain