SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene199837

Length: 358 nt

UniGene Fasta

>sp_v3.0_unigene199837
CAATGAATTTAAATGTTGGTCCACAACATCCAGCTGCGCACGGTGTTTTAAGATTAATAGTTCAATTAAATGGTGAAATTATTGAAAAAATTGACCCTCATATTGGTTTATTGCACAGAGGTACAGAAAAATTAATGGAAGATAAAATTTATTTACATTCTTTACCTTTTTGATAGATTTGATTATGTATCAATGTTAGTTCAAGAACACGCATATTGTTTAGCAATAGAATCTTTATTAGGTACATTAAATTACAGTGCTACTTTTGTTCAAATCAGAACTCTTTACGATGAAATTACTCGTATATTAAATCATTTACTAGCTATCGCATGTCACGCTTTAGATGTTGGAAGTATGT

Ace file of the UniGene sp_v3.0_unigene199837

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NADH dehydrogenase subunit 7 n=5 Tax=Tetrahymena RepID=Q09F70_TETPR	-	-	87%
FL-Next	sp=NAD(P)H-quinone oxidoreductase subunit H, chloroplastic; Cephalotaxus wilsoniana. Plastid; Chloroplast.	-	-	50%
Sma3	NADH dehydrogenase subunit 7	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	NADH dehydrogenase (ubiquinone).	EC:1.6.5.3	-	5.506e-17	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Oxidative phosphorylation	00190		5.506e-17	%
Sma3	Metabolic pathways	01100		5.506e-17	%
Sma3	NADH dehydrogenase.	EC:1.6.99.3	-	3.453e-14	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Oxidative phosphorylation	00190		3.453e-14	%
Sma3	Metabolic pathways	01100		3.453e-14	%

Source	Gene names
Sma3	AtMg00510; CHLREDRAFT_185013; HAM_059; MicpuC_mit19; MicpuN_mit76; NAD7; NUO7; Nad7; OtMtg00150; nad7; nd7;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	NADH dehydrogenase (ubiquinone) activity	GO:0008137	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity, acting on NADH or NADPH	GO:0016651	Molecular Function	-
Sma3	NAD binding	GO:0051287	Molecular Function	-
Sma3	4 iron, 4 sulfur cluster binding	GO:0051539	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	electron transport chain	GO:0022900	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	NADH-quinone oxidoreductase, subunit D	IPR001135	-	-
Sma3	NADH dehydrogenase I, subunit D	IPR010219	-	-
Sma3	NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site	IPR014029	-	-
Sma3	Pectinesterase, active site	IPR018040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	ATMG00510.1	NAD7 NADH dehydrogenase subunit 7 chrM:132071-138153 FORWARD LENGTH=394	1.0e-29	66%
RefSeq	Arabidopsis thaliana	NP_085511.1	NADH dehydrogenase subunit 7 (mitochondrion) [Arabidopsis thaliana]	1.0e-29	66%
RefSeq	Populus trichocarpa	XP_002333493.1	predicted protein [Populus trichocarpa]	3.0e-14	56%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: G4LAP7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 264 aas, atg_distance in limit (1-15): atg_distance = 9, your sequence is shorter than subject: 57 - 391

Fln protein: MNLNVGPQHPAAHGVLRLIVQLNGEIIEKIDPHIGLLHRGTEKLMEDKIYLHSLPF*

Protein Length: 58

Fln nts: CA_-_ATGAATTTAAATGTTGGTCCACAACATCCAGCTGCGCACGGTGTTTTAAGATTAATAGTTCAATTAAATGGTGAAATTATTGAAAAAATTGACCCTCATATTGGTTTATTGCACAGAGGTACAGAAAAATTAATGGAAGATAAAATTTATTTACATTCTTTACCTTTTTGATAGATTTGATTATGTATCAATGTTAGTTCAAGAACACGCATATTGTTTAGCAATAGAATCTTTATTAGGTACATTAAATTACAGTGCTACTTTTGTTCAAATCAGAACTCTTTACGATGAAATTACTCGTATATTAAATCATTTACTAGCTATCGCATGTCACGCTTTAGATGTTGGAAGTATGT

Fln Alignment:

AllPine_b_c42442___MNLNVGPQHPAAHGVLRLIVQLNGEIIEKIDPHIGLLHRGTEKLMEDKIYLHSLPF
G4LAP7________________MMLSMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIVQYLPY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain