SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene199793

Length: 362 nt

UniGene Fasta

>sp_v3.0_unigene199793
ATACTTATTTTATTAAGTAAAGCAGGCAAAAAGATCGAATAGGATTTAATGTTTGAGAAAGAAGTTGTGGTTGACGGCAAGGGCCATCTCCTCGGTAGACTTGCTTCTATCGTTGCTAAGGAGCTCCTCAATGGTCAAAGAGTTGTTATCGTTAGATGCGAGAAAGTTTTGATGTCTGGCTCTCTTTACAGACACAAAGTTTTGTACTCCGAATTCTTGAGAAAGAGAATGCTCCACAACCCAAGAAGAGGTATTCAACATTGGAAGGCTCCATCCAGATTGGTTTGGAGATGCATCAGAGGTATGCTTCCACACAAGACTCCAAGAGGTGCTGCCTCATTAGCCAGACTAAAAGCCTTCGA

Ace file of the UniGene sp_v3.0_unigene199793

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein L13 containing protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q245E7_TETTH	-	-	1.0e-36	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Sma3	60S ribosomal protein L13a	-	-	8.045e-21	-

Source	Gene names
Sma3	170F8.7; At3g07110; At3g24830; At4g13170; At5g48760; CHLREDRAFT_162845; F17N18.60; GSVIVT00019003001; GSVIVT00031707001; GSVIVT00033857001; K24G6.9; K7P8.12; LOC_Os03g54890; MICPUCDRAFT_30605; MICPUN_93104; OJ1567_G09.119; OSJNBb0081K01.9; OSTLU_26899; Os

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	large ribosomal subunit	GO:0015934	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L13, eukaryotic/archaeal	IPR005755	-	0.0	-
Sma3	Ribosomal protein L13	IPR005822	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G48760.1	Ribosomal protein L13 family protein chr5:19771315-19772686 REVERSE LENGTH=206	8.0e-40	63%
RefSeq	Arabidopsis thaliana	NP_199687.1	60S ribosomal protein L13a-4 [Arabidopsis thaliana]	1.0e-39	63%
RefSeq	Populus trichocarpa	XP_002323772.1	predicted protein [Populus trichocarpa]	2.0e-40	64%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNL7

Fln msg: Distance to subject end: 95 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 104 - 206

Fln protein: MFEKEVVVDGKGHLLGRLASIVAKELLNGQRVVIVRCEKVLMSGSLYRHKVLYSEFLRKRMLHNPRRGIQHWKAPSRLVWRCIRGMLPHKTPRGAASLARLKAF

Protein Length: 105

Fln nts: ATACTTATTTTATTAAGTAAAGCAGGCAAAAAGATCGAATAGGATTTA_-_ATGTTTGAGAAAGAAGTTGTGGTTGACGGCAAGGGCCATCTCCTCGGTAGACTTGCTTCTATCGTTGCTAAGGAGCTCCTCAATGGTCAAAGAGTTGTTATCGTTAGATGCGAGAAAGTTTTGATGTCTGGCTCTCTTTACAGACACAAAGTTTTGTACTCCGAATTCTTGAGAAAGAGAATGCTCCACAACCCAAGAAGAGGTATTCAACATTGGAAGGCTCCATCCAGATTGGTTTGGAGATGCATCAGAGGTATGCTTCCACACAAGACTCCAAGAGGTGCTGCCTCATTAGCCAGACTAAAAGCCTTCGA

Fln Alignment:

AllPine_b_c42391___KEVVVDGKGHLLGRLASIVAKELLNGQRVVIVRCEKVLMSGSLYRHKVLYSEFLRKRMLHNPRRGIQHWKAPSRLVWRCIRGMLPHKTPRGAASLARLKAF
A9NNL7________________KEVVVDARHHMLGRLASILAKELLHGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPSRILWRTIRGMIPHKTKRGAAALARLRAF

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain