SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene199742

Length: 380 nt

UniGene Fasta

>sp_v3.0_unigene199742
TGAAGCAGTCAAAGTGTCATCGATGTCCCAAACTACCCTCTCAATACGAGATCACAGACAAGAAAACGAGACTCAAGAACAAGGTCCTCGAGCTTCGTCATTACATCTCCGATGAGAACCTTCAGCTGATGCCTGATTTCCAACAACGCATTCTCGTTCTTCAAACACTGAACTACGTCTCCGAAGAGGACAGAAGTGTGCTGATCAAGGGAAGAGTGGCCAGGGAAATGAACACCGTGAGAGATGAATTGATCGCAACGGAAATCATCTTTGAAAACGTGCTGACTGACTTGAAGGCCGAGGAATGTGTGGCTCTCTTATCTTCACTCATCTTCCAGGAGTCTTCAGAGAACGAACCACAACTCACTCCCTCTTTGATG

Ace file of the UniGene sp_v3.0_unigene199742

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DEAD/DEAH box helicase n=1 Tax=Dictyostelium fasciculatum RepID=F4QDX4_9MYCE	-	-	1.0e-26	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	30%

Source	Gene names
Sma3	GSVIVT00024171001; MICPUCDRAFT_44314; MICPUN_65181; OSTLU_805; Ot01g02970; PHATRDRAFT_33072; PHYPADRAFT_227295; POPTRDRAFT_723138; RCOM_0730930;

Source	GOs	Term	Type	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Peptidoglycan binding-like	IPR002477	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	DSH, C-terminal	IPR012961	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	RNA helicase, ATP-dependent, SK12/DOB1	IPR016438	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002313400.1	predicted protein [Populus trichocarpa]	4.0e-26	47%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMT3

Fln msg: Distance to subject end: 113 aas, your sequence is shorter than subject: 126 - 884

Fln protein: KQSKCHRCPKLPSQYEITDKKTRLKNKVLELRHYISDENLQLMPDFQQRILVLQTLNYVSEEDRSVLIKGRVAREMNTVRDELIATEIIFENVLTDLKAEECVALLSSLIFQESSENEPQLTPSLM

Protein Length: 127

Fln nts: TGAAGCAGTCAAAGTGTCATCGATGTCCCAAACTACCCTCTCAATACGAGATCACAGACAAGAAAACGAGACTCAAGAACAAGGTCCTCGAGCTTCGTCATTACATCTCCGATGAGAACCTTCAGCTGATGCCTGATTTCCAACAACGCATTCTCGTTCTTCAAACACTGAACTACGTCTCCGAAGAGGACAGAAGTGTGCTGATCAAGGGAAGAGTGGCCAGGGAAATGAACACCGTGAGAGATGAATTGATCGCAACGGAAATCATCTTTGAAAACGTGCTGACTGACTTGAAGGCCGAGGAATGTGTGGCTCTCTTATCTTCACTCATCTTCCAGGAGTCTTCAGAGAACGAACCACAACTCACTCCCTCTTTGATG

Fln Alignment:

AllPine_b_c42322___RCPKLPSQYEITDKKTRLKNKVLELRHYI-SDENLQLMPDFQQRILVLQTLNYVSEEDRSVLIKGRVAREMNTVRDELIATEIIFENVLTDLKAEECVALLSSLIFQESSENEPQLTPSL
B8LMT3________________KSPILQKRLQVLRKKEELTAMVRAARRQVRASTSLAFKDELKARKRVLRRLGYATSDD-VVELKGKVACEISSA-DELALTELMFSGVFKDATVEQLVSLLSCFVWQEKLKDRPKIREDL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain