SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene199600

Length: 555 nt

UniGene Fasta

>sp_v3.0_unigene199600
AAGGAGGCGGTGGGTGAATGTGAATTTGCGGAAGGCATGAACATCACAGGGTGGGTGAAGAAGATGACGAATTGGAAAAGAGAAGAAGTAAAGAAGATTATAGATCCGAGGCTCAGTAGCGTCCCAATGCGAGAAGCCATGCACATGTTCTCCGTGGCTCTGCTATGCACGCAAGAACAGCCCGTCGATAGGCCTACCATGCGGGAGATAGTCCACAGGCTCACAGGCGGAGTCGATGGATTAACGTTGCAGTCTCACGGAGAATAGGATCGACCAAAGCCACAGTCCGTGGACTAACATGGTTTCTCAATGTACGTCAGTTAGTGTTATGCTCTGTTACTGTTTCTGTCAGTTAGTGTTATGCTTTGTTACTGTTTCTGTCGGTTAGTGTTATGCTCAGTTACCGTGTCCCAAATGCTAGTGACATTACCTTTCAGATCGCATTGTTCTAAAAATTGCCCGTACCATTTCACCATTTCTCCATGTTACAGTGATTGTAATGACCAGGGTCATGATACTGACCAAAGTGCTTATAATGATTATAGTGGGTATCTT

Ace file of the UniGene sp_v3.0_unigene199600

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor-like protein kinase (Fragment) n=1 Tax=Elaeis guineensis RepID=Q84XU5_ELAGV	-	-	5.0e-17	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%

Source	Gene names
Sma3	AT3G49670; At3g49670; GSVIVT00010646001; LOC_Os03g56270; LRR-RLK; MtrDRAFT_AC140550g38v2; OJ1118_D07.29; OSJNBb0094O03.15; Os03g0773700; Os07g0134200; OsI_13698; OsI_24796; OsJ_12761; OsJ_22997; P0507H12.14; POPTRDRAFT_717990; RCOM_0339270; RLK1; RLK2; RL

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	regulation of meristem structural organization	GO:0009934	Biological Process	-
Sma3	regulation of meristem growth	GO:0010075	Biological Process	-
Sma3	microsporocyte differentiation	GO:0010480	Biological Process	-
Sma3	gametophyte development	GO:0048229	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G65700.1	BAM1 Leucine-rich receptor-like protein kinase family protein chr5:26281826-26284945 FORWARD LENGTH=1003	3.0e-19	54%
RefSeq	Arabidopsis thaliana	NP_001190624.1	leucine-rich receptor-like protein kinase BAM1 [Arabidopsis thaliana]	4.0e-19	54%
RefSeq	Populus trichocarpa	XP_002310320.1	predicted protein [Populus trichocarpa]	2.0e-19	57%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZ80

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 36 aas, putative chimeric sequence, your sequence is shorter than subject: 89 - 172

Fln protein: KEAVGECEFAEGMNITGWVKKMTNWKREEVKKIIDPRLSSVPMREAMHMFSVALLCTQEQPVDRPTMREIVHRLTGGVDGLTLQSHGE*

Protein Length: 90

Fln nts: AAGGAGGCGGTGGGTGAATGTGAATTTGCGGAAGGCATGAACATCACAGGGTGGGTGAAGAAGATGACGAATTGGAAAAGAGAAGAAGTAAAGAAGATTATAGATCCGAGGCTCAGTAGCGTCCCAATGCGAGAAGCCATGCACATGTTCTCCGTGGCTCTGCTATGCACGCAAGAACAGCCCGTCGATAGGCCTACCATGCGGGAGATAGTCCACAGGCTCACAGGCGGAGTCGATGGATTAACGTTGCAGTCTCACGGAGAATAG___GATCGACCAAAGCCACAGTCCGTGGACTAACATGGTTTCTCAATGTACGTCAGTTAGTGTTATGCTCTGTTACTGTTTCTGTCAGTTAGTGTTATGCTTTGTTACTGTTTCTGTCGGTTAGTGTTATGCTCAGTTACCGTGTCCCAAATGCTAGTGACATTACCTTTCAGATCGCATTGTTCTAAAAATTGCCCGTACCATTTCACCATTTCTCCATGTTACAGTGATTGTAATGACCAGGGTCATGATACTGACCAAAGTGCTTATAATGATTATAGTGGGTATCTT

Fln Alignment:

AllPine_b_c42148___WVKKMTNWKREEVKKIIDPRL-SSVPMREAMHMFSVALLCTQEQPVDRPTMREIVHRLTGGVDGL
A9NZ80________________WVKGMLRERR--LDRLVDPELQSNYEETEVEELIQVALLCTQNSPMERPKMADVVRMLEG--DGL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain