SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene199294

Length: 478 nt

UniGene Fasta

>sp_v3.0_unigene199294
AGTTGAGCACGTTGATGAGATCCCTGGGCTGTCCTGCCACCGACGAAGAGCTGCAGCTGATGGTGAGCATGGCCGATTCTGACGGCGACGGTTTCATAAACTTGTCAAATTTTGCGGCGATGAACACCTTCAGTGTCGACGAGGCGCCCAGCCTCGACGACATGGAGAGCGCTTTCGGCGTCTTCGATTTCGACGGCAATGGAGGCATCTCCCCTGATGAGCTGCTGAGGCTATTCAAGAGCCTGGGACACTCTTCATCTCTGGAGGATTGTCGTAATATGATTGCAGAAGTCGACTCTAATAGAGATGGATATGTGAGCTTTGATGAATTTCTGACAATGATGATAACTTCATCTTCATCTGTTTAGGTAAGGCGCTGCGGGAAAGGGCCAGAGAAATAGTCAAATGTAAATATTGCATTTCTCAAGACTACTTTACTTACTACGACAGTTCATCGGTCAATCAGCCTTCCGGTTAC

Ace file of the UniGene sp_v3.0_unigene199294

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable calcium-binding protein CML10 n=3 Tax=Oryza sativa RepID=CML10_ORYSJ	-	-	2.0e-23	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Sma3	Polcalcin Jun o 2	-	-	9.902e-12	-

Source	Gene names
Sma3	B1147A04.18; CML10; LOC_Os01g72100; Os01g0949500; OsI_05196; OsJ_04761;

Source	GOs	Term	Type	Identity
Sma3	bacterial-type flagellum	GO:0009288	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	ciliary or flagellar motility	GO:0001539	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002314786.1	predicted protein, partial [Populus trichocarpa]	1.0e-31	46%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZH0

Fln msg: your sequence is shorter than subject: 122 - 194

Fln protein: LSTLMRSLGCPATDEELQLMVSMADSDGDGFINLSNFAAMNTFSVDEAPSLDDMESAFGVFDFDGNGGISPDELLRLFKSLGHSSSLEDCRNMIAEVDSNRDGYVSFDEFLTMMITSSSSV*

Protein Length: 123

Fln nts: AGTTGAGCACGTTGATGAGATCCCTGGGCTGTCCTGCCACCGACGAAGAGCTGCAGCTGATGGTGAGCATGGCCGATTCTGACGGCGACGGTTTCATAAACTTGTCAAATTTTGCGGCGATGAACACCTTCAGTGTCGACGAGGCGCCCAGCCTCGACGACATGGAGAGCGCTTTCGGCGTCTTCGATTTCGACGGCAATGGAGGCATCTCCCCTGATGAGCTGCTGAGGCTATTCAAGAGCCTGGGACACTCTTCATCTCTGGAGGATTGTCGTAATATGATTGCAGAAGTCGACTCTAATAGAGATGGATATGTGAGCTTTGATGAATTTCTGACAATGATGATAACTTCATCTTCATCTGTTTAG___GTAAGGCGCTGCGGGAAAGGGCCAGAGAAATAGTCAAATGTAAATATTGCATTTCTCAAGACTACTTTACTTACTACGACAGTTCATCGGTCAATCAGCCTTCCGGTTAC

Fln Alignment:

AllPine_b_c41647___LSTLMRSLGCPATDEELQLMVSMADSDGDGFINLSNFAAMNTFSVDEAPSLDDMESAFGVFDFDGNGGISPDELLRLFKSLGHSSSLEDCRNMIAEVDSNRDGYVSFDEFLTMMIT
A9NZH0________________LGDILRSMGCRVGPRELGLMMKEADADGDGFISLEEFIDLNTKGNDKAACLEDLKNAFKVFDLDRNGSISADELYQVLKGMGDGSSREDCQNMITGVDRNGDGLINFEEFKTMMTT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain