SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene199275

Length: 315 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene199275
GCGATGGATTCTTCTAGATAAATACTTAGAAGATTTACTATCCATCCCAAATATTGCTGAACAACATGAAGTATGGGACTTTCTAAGTGCCACATCCAAGAATTATTCCTTTAGAAAGACCCCTTCAGTAATGAAAACCTTGGCTGTCAATGTTGATGTTGCCATGGATGATATAGTTCGCCAACTCAAAGAAGTGTCAGATGGTCTTCTACGCAAAGTATCTGGTGTCGCATCCTCATCTGAGGGGATGCCTAGTGAACCAAAGGAACTTCCTATTAAATTGTCATGGAAATCTGAGACTGCTATTCCCAATGA

Ace file of the UniGene sp_v3.0_unigene199275 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	67%

Source	Gene names
Sma3	At2g15900; GSVIVT00036497001; LOC_Os11g06040; OsI_35199; OsJ_33047; PHYPADRAFT_113447; PHYPADRAFT_127974; PHYPADRAFT_77750; POPTRDRAFT_1087015; POPTRDRAFT_267720; RCOM_0939510; VITISV_027626;

Source	GOs	Term	Type	Identity
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	phosphatidylinositol binding	GO:0035091	Molecular Function	-
Sma3	cell communication	GO:0007154	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Phox homologous domain	IPR001683	-	-
Sma3	Phox-associated domain	IPR003114	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Sorting nexin, C-terminal	IPR013937	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G15900.1	" Phox-associated domain;Phox-like;Sorting nexin, C-terminal chr2:6927390-6932535 FORWARD LENGTH=994"	4.0e-31	80%
RefSeq	Arabidopsis thaliana	NP_179190.3	phox domain-containing protein [Arabidopsis thaliana]	5.0e-31	80%
RefSeq	Populus trichocarpa	XP_002313832.1	predicted protein [Populus trichocarpa]	1.0e-30	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: I1JEY8

Fln msg: Distance to subject end: 298 aas, your sequence is shorter than subject: 104 - 755

Fln protein: RWILLDKYLEDLLSIPNIAEQHEVWDFLSATSKNYSFRKTPSVMKTLAVNVDVAMDDIVRQLKEVSDGLLRKVSGVASSSEGMPSEPKELPIKLSWKSETAIPN

Protein Length: 105

Fln nts: GCGATGGATTCTTCTAGATAAATACTTAGAAGATTTACTATCCATCCCAAATATTGCTGAACAACATGAAGTATGGGACTTTCTAAGTGCCACATCCAAGAATTATTCCTTTAGAAAGACCCCTTCAGTAATGAAAACCTTGGCTGTCAATGTTGATGTTGCCATGGATGATATAGTTCGCCAACTCAAAGAAGTGTCAGATGGTCTTCTACGCAAAGTATCTGGTGTCGCATCCTCATCTGAGGGGATGCCTAGTGAACCAAAGGAACTTCCTATTAAATTGTCATGGAAATCTGAGACTGCTATTCCCAATGA

Fln Alignment:

AllPine_b_c41613___RWILLDKYLEDLLSIPNIAEQHEVWDFLSATSKNYSFRKTPSVMKTLAVNVDVAMDDIVRQLKEVSDGLLRKVSGVASSSEGMPSEPKELPIKLSWKSE
I1JEY8________________RCIQLDKYLQDLLSIANVAEQHEVWDFFSVSSKNYSFGKSPSVMKTLAVNVDDAMDDIVRQFKGVSDGLRRKVVG-SSSLINEGSATSNTPWNLSWNAD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain