UniGene Name: sp_v3.0_unigene199222
Length: 226 nt
UniGene Fasta |
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>sp_v3.0_unigene199222
A |
Ace file of the UniGene sp_v3.0_unigene199222 |
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Annotations |
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Source | Descriptions | Term | Type | e value | Identity |
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AutoFact | putative auxin response factor 1 [Oryza sativa Indica Group] | - | - | 1.0e-10 | 69% |
FL-Next | tr=Putative auxin response factor 3/4; Pinus pinaster (Maritime pine). | - | - | 0.0 | 97% |
Sma3 | Auxin response factor, putative | - | - | 2.161e-12 | - |
Source | Gene names |
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Sma3 | ARF1; ARF11; ARF2; ARF23; ARF5; ARF8; At5g62000; GSVIVT00003037001; GSVIVT00008630001; GSVIVT00018031001; GSVIVT00018838001; GSVIVT00023445001; GSVIVT00028351001; MA4_106O17.24; MNT; MP; MTG10.3; OSIGBa0099L20.10; OsI_017171; OsI_035079; OsJ_16524; OsJ_34 |
Source | GOs | Term | Type | e value | Identity |
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Sma3 | nucleus | GO:0005634 | Cellular Component | 0.0 | - |
Sma3 | DNA binding | GO:0003677 | Molecular Function | 0.0 | - |
Sma3 | protein dimerization activity | GO:0046983 | Molecular Function | 0.0 | - |
Sma3 | regulation of transcription, DNA-dependent | GO:0006355 | Biological Process | 0.0 | - |
Sma3 | negative regulation of cell proliferation | GO:0008285 | Biological Process | 0.0 | - |
Sma3 | response to hormone stimulus | GO:0009725 | Biological Process | 0.0 | - |
Sma3 | auxin mediated signaling pathway | GO:0009734 | Biological Process | 0.0 | - |
Sma3 | positive regulation of flower development | GO:0009911 | Biological Process | 0.0 | - |
Sma3 | fruit dehiscence | GO:0010047 | Biological Process | 0.0 | - |
Sma3 | leaf senescence | GO:0010150 | Biological Process | 0.0 | - |
Sma3 | floral organ abscission | GO:0010227 | Biological Process | 0.0 | - |
Sma3 | negative regulation of transcription, DNA-dependent | GO:0045892 | Biological Process | 0.0 | - |
Sma3 | ovule development | GO:0048481 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
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Sma3 | AUX/IAA protein | IPR003311 | - | 0.0 | - |
Sma3 | B3 DNA binding domain | IPR003340 | - | 0.0 | - |
Sma3 | Auxin response factor | IPR010525 | - | 0.0 | - |
Sma3 | Aux/IAA-ARF-dimerisation | IPR011525 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
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ATG | Arabidoptis thaliana | AT5G62000.1 | ARF2, ARF1-BP, HSS, ORE14 auxin response factor 2 chr5:24910859-24914680 FORWARD LENGTH=859 | 9.0e-14 | 69% |
RefSeq | Arabidopsis thaliana | NP_001190591.1 | auxin response factor 2 [Arabidopsis thaliana] | 1.0e-13 | 69% |
RefSeq | Populus trichocarpa | XP_002307574.1 | predicted protein, partial [Populus trichocarpa] | 3.0e-14 | 66% |
Full-Lengther Next Prediction |
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Fln status: Internal
Fln database: coniferopsida.fasta
Fln subject: E1UHY2
Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 502 aas, your sequence is shorter than subject: 53 - 919
Fln protein:
M
Protein Length:
54
Fln nts:
A
Fln Alignment:
AllPine_b_c41512___MRFKMRFETEDATERRYTGTIVGIGDVDPMRWPNLRWRSFKV
E1UHY2________________MRFKMRFETEDATERRYTGTIVGIGDVDPMRWPNSRWRSFKV
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain