SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene199071

Length: 454 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene199071
CAAGACTCTCATAGAGGATTAGCAGTCATGGACTCCTTAGATGTTAAGATCCAGATCCTCTTAGGTCCAGAAGCAGCGCCGTTTGAGTCTCTGATTGAACATTTGATGGGTACTGGTAATGAATCCCGTGGTCAAGCTGAGGAATTATTCAATGCTTGTAAGCAGATGCACCCTGATACATTGCTCCTGAAGTTAGTACACATACTTCAATATAGTTCCCAACCTGGTTTACGATCTATGGCTGCTGTGCTCCTCCGTAAGCAAACTGGTCTTTGGACTCAAATCGGGGAATCCTCTCGTTGTGCATTGAAGGAGCAAATACTAGTCTGCTTGCAGAGGGAGGAAACAAAGAGTGTGCTGAAAAAACTTTGTGATACAGTGGCTGAGCTAGCAGCAAGCATTTCAGATGAAGATGAATGGCCAGAATTGTTCTCCTTCCTCTTCCAATGCAGCA

Ace file of the UniGene sp_v3.0_unigene199071 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Armadillo/beta-catenin-like repeat-containing protein n=2 Tax=Arabidopsis RepID=Q93VS8_ARATH	-	-	4.0e-34	52%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	54%
Sma3	Importin beta-3, putative	-	-	2.039e-09	-

Source	Gene names
Sma3	At5g19820; GSVIVT00024803001; GSVIVT00025460001; PHYPADRAFT_169387; PHYPADRAFT_206059; POPTRDRAFT_241726; POPTRDRAFT_555202; POPTRDRAFT_797014; RCOM_1120720; RCOM_1361100;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nuclear pore	GO:0005643	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein transporter activity	GO:0008565	Molecular Function	-
Sma3	protein import into nucleus, docking	GO:0000059	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	HEAT	IPR000357	-	-
Sma3	Importin-beta, N-terminal	IPR001494	-	-
Sma3	PBS lyase HEAT-like repeat	IPR004155	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G19820.1	emb2734 ARM repeat superfamily protein chr5:6695731-6701247 REVERSE LENGTH=1116	9.99995e-41	52%
RefSeq	Arabidopsis thaliana	NP_197483.1	armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana]	9.99995e-41	52%
RefSeq	Populus trichocarpa	XP_002319155.1	predicted protein, partial [Populus trichocarpa]	2.0e-36	48%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: D8SIW9

Fln msg: Distance to subject end: 967 aas, your sequence is shorter than subject: 142 - 1110

Fln protein: MDSLDVKIQILLGPEAAPFESLIEHLMGTGNESRGQAEELFNACKQMHPDTLLLKLVHILQYSSQPGLRSMAAVLLRKQTGLWTQIGESSRCALKEQILVCLQREETKSVLKKLCDTVAELAASISDEDEWPELFSFLFQCS

Protein Length: 143

Fln nts: CAAGACTCTCATAGAGGATTAGCAGTC_-_ATGGACTCCTTAGATGTTAAGATCCAGATCCTCTTAGGTCCAGAAGCAGCGCCGTTTGAGTCTCTGATTGAACATTTGATGGGTACTGGTAATGAATCCCGTGGTCAAGCTGAGGAATTATTCAATGCTTGTAAGCAGATGCACCCTGATACATTGCTCCTGAAGTTAGTACACATACTTCAATATAGTTCCCAACCTGGTTTACGATCTATGGCTGCTGTGCTCCTCCGTAAGCAAACTGGTCTTTGGACTCAAATCGGGGAATCCTCTCGTTGTGCATTGAAGGAGCAAATACTAGTCTGCTTGCAGAGGGAGGAAACAAAGAGTGTGCTGAAAAAACTTTGTGATACAGTGGCTGAGCTAGCAGCAAGCATTTCAGATGAAGATGAATGGCCAGAATTGTTCTCCTTCCTCTTCCAATGCAGCA

Fln Alignment:

AllPine_b_c41255___LDVKIQILLGPEAAPFESLIEHLMGTGNESRGQAEELFNACKQMHPDTLLLKLVHILQYSSQPGLRSMAAVLLRK-----QTGLWTQIGESSRCALKEQILVCLQREETKSVLKKLCDTVAELAASISDEDEWPELFSFLFQC
D8SIW9________________MEAEVAAVLGMEMAPFEALVAQLMSPTNDQRGHAEQLFNACKAQHPDTLVLKLVHTLQ-SGHVETRAMSAILLRKLITKDEVSLWSLLNPNTHATLKTQLLVCVQREETKSTLKKLCDTVAELAASLIEDGSWPELLPFMFQC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain