SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene198964

Length: 220 nt

UniGene Fasta

>sp_v3.0_unigene198964
AACACCCGGATATGTTGCTCCTGAAGTTCTAAAAGGAGAGGGATATCACCAAGAGGTAGATGTGTGGAGCATTGGAGTTATTATGTACATTCTTTTATGCGGATTCCCACCATTTTATGGAGCCAACAATACACAGCTGTTTGAGAAAATCATGGCTGGCACTTACTGGTTCCCTTCACCTTATTGGGACCTAATTACTCCTTCTGCAAAGGATTTGATC

Ace file of the UniGene sp_v3.0_unigene198964

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein kinase domain-containing protein n=1 Tax=Capsaspora owczarzaki ATCC 30864 RepID=E9CBR2_9EUKA	-	-	2.0e-24	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%

Source	Gene names
Sma3	At5g23580; CDPK9; CPK12; GSVIVT00001083001; GSVIVT00031812001; LOC_Os03g57450; MQM1.15; OSJNBb0024J04.20; Os03g0788500; OsI_13822; OsJ_12879; PHATRDRAFT_25067; POPTRDRAFT_1102323; POPTRDRAFT_728605; RCOM_1599390; THAPSDRAFT_789; VITISV_030252;

Source	GOs	Term	Type	Identity
Sma3	chromosome, centromeric region	GO:0000775	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	phosphorylase kinase complex	GO:0005964	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	phosphorylase kinase activity	GO:0004689	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	calmodulin binding	GO:0005516	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	glycogen biosynthetic process	GO:0005978	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	meiotic chromosome segregation	GO:0045132	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Phosphorylase kinase, gamma catalytic subunit	IPR002291	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Shugoshin, C-terminal	IPR011515	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3		IPR015734	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G12580.1	PEPKR1 phosphoenolpyruvate carboxylase-related kinase 1 chr1:4283635-4285675 FORWARD LENGTH=522	8.0e-19	53%
RefSeq	Arabidopsis thaliana	NP_172719.1	phosphoenolpyruvate carboxylase-related kinase 1 [Arabidopsis thaliana]	1.0e-18	53%
RefSeq	Populus trichocarpa	XP_002319653.1	predicted protein [Populus trichocarpa]	1.0e-21	49%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LP72

Fln msg: Distance to subject end: 32 aas, your sequence is shorter than subject: 73 - 283

Fln protein: TPGYVAPEVLKGEGYHQEVDVWSIGVIMYILLCGFPPFYGANNTQLFEKIMAGTYWFPSPYWDLITPSAKDLI

Protein Length: 74

Fln nts: AACACCCGGATATGTTGCTCCTGAAGTTCTAAAAGGAGAGGGATATCACCAAGAGGTAGATGTGTGGAGCATTGGAGTTATTATGTACATTCTTTTATGCGGATTCCCACCATTTTATGGAGCCAACAATACACAGCTGTTTGAGAAAATCATGGCTGGCACTTACTGGTTCCCTTCACCTTATTGGGACCTAATTACTCCTTCTGCAAAGGATTTGATC

Fln Alignment:

AllPine_b_c41048___TPGYVAPEVLKGEGYHQEVDVWSIGVIMYILLCGFPPFYGANNTQLFEKIMAGTYWFPSPYWDLITPSAKDLI
B8LP72________________TPYYVAPEVLGGKDYSEKVDVWSAGVIVYIMLSGVAPFLGDTPQEIFEAVLCGRLRFPSDPWLSISNSAKDLI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain