SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene198918

Length: 412 nt

UniGene Fasta

>sp_v3.0_unigene198918
ACGAGATGTCCACATGAAAAATAGATGCCAATTCTCACAGAGAGTCTGCCACTGATAAAGGTGGCAAAAAAGTTAGGTTCTTCTGGTACAAAATCTAATTCCAGGAAATTCCCAGTGGTTGCTGCCGATTCAATGGACTATTCTAATATCCCTTCTGCAGAGGGGCTGAAGAAGCAGAGAAACAATGGTAGGAAAATCACACTCTCCAGAATACAAGATTCTATGCTAGCTGCAGGGTCTCCAGTCAGGGTTATTTCAGGAGCTTTTGCTGGGTTTACTGGCCATCTGAAAGAGATTGATGCAGACACTGGCAAGGCAAAAGTAATGCTTATGATGTTTGGAAATGAATTACCAGTGGACATGGAAATTGATCAAGTTGAATGTGAACCATGTCAGGGTAGTAATGAACCTT

Ace file of the UniGene sp_v3.0_unigene198918

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transcription antitermination protein nusG n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3A9Q1_CARHZ	-	-	7.0e-07	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%

Source	GOs	Term	Type	e value	Identity
Sma3	transcription elongation regulator activity	GO:0003711	Molecular Function	0.0	-
Sma3	positive regulation of transcription elongation from RNA polymerase II promoter	GO:0032968	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription antitermination protein, NusG, N-terminal	IPR006645	-	0.0	-
Sma3	Translation protein SH3-like, subgroup	IPR014722	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQH7

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 11 aas, your sequence is shorter than subject: 137 - 379

Fln protein: TRCPHEK*MPILTESLPLIKVAKKLGSSGTKSNSRKFPVVAADSMDYSNIPSAEGLKKQRNNGRKITLSRIQDSMLAAGSPVRVISGAFAGFTGHLKEIDADTGKAKVMLMMFGNELPVDMEIDQVECEPCQGSNEP

Protein Length: 138

Fln nts: ACGAGATGTCCACATGAAAAATAGATGCCAATTCTCACAGAGAGTCTGCCACTGATAAAGGTGGCAAAAAAGTTAGGTTCTTCTGGTACAAAATCTAATTCCAGGAAATTCCCAGTGGTTGCTGCCGATTCAATGGACTATTCTAATATCCCTTCTGCAGAGGGGCTGAAGAAGCAGAGAAACAATGGTAGGAAAATCACACTCTCCAGAATACAAGATTCTATGCTAGCTGCAGGGTCTCCAGTCAGGGTTATTTCAGGAGCTTTTGCTGGGTTTACTGGCCATCTGAAAGAGATTGATGCAGACACTGGCAAGGCAAAAGTAATGCTTATGATGTTTGGAAATGAATTACCAGTGGACATGGAAATTGATCAAGTTGAATGTGAACCATGTCAGGGTAGTAATGAACCTT

Fln Alignment:

AllPine_b_c40966___KVAKKLGSSGTKSNSRKFPVVAADSMDYSNIPSAEGLKKQRNNGRKITLSRIQDSMLAAGSPVRVISGAFAGFTGHLKEIDADTGKAKVMLMMFGNELPVDMEI
A9NQH7________________KGGKQVGSIGTKSNSKKFPVVAADSTDSSNMPSVKGLKKQRNSGRKVALSRKQDSMLVAGSPVRVISGAFTEFTGHLKEIDADAGKAKLMLMMSGHELPVNMEI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain