SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene198753

Length: 114 nt

UniGene Fasta

>sp_v3.0_unigene198753
CGTGGTGACTTGTTTGTCCACTGGGAGAAGGGTCGAGATGTCTTTGACAGATTACTGATTGATTCAGATTGGGCAATTAATAATAGCAACTGGATGTGGCTGTCCTGTTCAGCA

Ace file of the UniGene sp_v3.0_unigene198753

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	(6-4)DNA photolyase n=2 Tax=Oryza sativa RepID=UVR3_ORYSJ	-	-	3.0e-15	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%

Source	Gene names
Sma3	At3g15620; GSVIVT00034555001; MICPUCDRAFT_19486; MICPUN_61974; OSJNBb0056C19.3; OSTLU_31489; Os02g0204400; OsI_06300; OsJ_05816; Ot05g00260; P0544H11.19; PHYPADRAFT_114984; POPTRDRAFT_756784; RCOM_0897900; UVR3; VITISV_029095;

Source	GOs	Term	Type	Identity
Sma3	DNA photolyase activity	GO:0003913	Molecular Function	-
Sma3	DNA (6-4) photolyase activity	GO:0003914	Molecular Function	-
Sma3	DNA repair	GO:0006281	Biological Process	-
Sma3	response to UV	GO:0009411	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	-
Sma3	DNA photolyase, FAD-binding/Cryptochrome, C-terminal	IPR005101	-	-
Sma3	DNA photolyase, N-terminal	IPR006050	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G15620.1	UVR3 DNA photolyase family protein chr3:5293475-5296548 REVERSE LENGTH=556	2.0e-20	86%
RefSeq	Arabidopsis thaliana	NP_001030703.1	(6-4)DNA photolyase [Arabidopsis thaliana]	2.0e-20	86%
RefSeq	Populus trichocarpa	XP_002304163.1	predicted protein [Populus trichocarpa]	1.0e-19	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKF0

Fln msg: Distance to subject end: 131 aas, your sequence is shorter than subject: 38 - 431

Fln protein: RGDLFVHWEKGRDVFDRLLIDSDWAINNSNWMWLSCSA

Protein Length: 39

Fln nts: CGTGGTGACTTGTTTGTCCACTGGGAGAAGGGTCGAGATGTCTTTGACAGATTACTGATTGATTCAGATTGGGCAATTAATAATAGCAACTGGATGTGGCTGTCCTGTTCAGCA

Fln Alignment:

AllPine_b_c40709___RGDLFVHWEKGRDVFDRLLIDSDWAINNSNWMWLSCSA
B8LKF0________________RGDLFVHWEKGRDVFDRLLIDSDWAINNSNWMWLSCSA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain