SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene198638

Length: 156 nt

UniGene Fasta

>sp_v3.0_unigene198638
CTGGTCGATACGCCAACAAGCAGTTCCGCAAGGCTCAGATGCCCATCGTTGAGCGTCTCGTCAACAGTCTCATGATGAACGGTCGTAACAACGGTAAGAAGCAAATGGCCGTCCGAATCGTGCCCCCGCCTTCGAAATTGTCAACCTCCTCACCGA

Ace file of the UniGene sp_v3.0_unigene198638

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S5 n=2 Tax=Pucciniales RepID=E3K755_PUCGT	-	-	4.0e-13	95%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Sma3	40S ribosomal protein S5	-	-	3.497e-21	-

Source	Gene names
Sma3	At2g37270; At3g11940; CHLREDRAFT_191776; F26K24.23; F3G5.6; GSVIVT00025458001; GSVIVT00026702001; LOC_Os11g29190; MEC18.4; MICPUCDRAFT_48485; MICPUN_90425; OSJNOa264G09.6; OSTLU_12674; Os01g0100700; Os11g0482000; OsI_00008; OsI_36106; OsJ_00007; OsJ_33893

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	small ribosomal subunit	GO:0015935	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S7	IPR000235	-	0.0	-
Sma3	Ribosomal protein S7, eukaryotic/archaeal	IPR005716	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G11940.1	ATRPS5A, AML1, RPS5A ribosomal protein 5A chr3:3778175-3779354 REVERSE LENGTH=207	1.0e-15	82%
RefSeq	Arabidopsis thaliana	NP_187800.1	40S ribosomal protein S5-2 [Arabidopsis thaliana]	2.0e-15	82%
RefSeq	Populus trichocarpa	XP_002322748.1	predicted protein, partial [Populus trichocarpa]	4.0e-13	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NRE6

Fln msg: Distance to subject end: 100 aas, your sequence is shorter than subject: 51 - 198

Fln protein: GRYANKQFRKAQMPIVERLVNSLMMNGRNNGKKQMAVRIVPPPSKLSTSSP

Protein Length: 52

Fln nts: CTGGTCGATACGCCAACAAGCAGTTCCGCAAGGCTCAGATGCCCATCGTTGAGCGTCTCGTCAACAGTCTCATGATGAACGGTCGTAACAACGGTAAGAAGCAAATGGCCGTCCGAATCGTGCCCCCGCCTTCGAAATTGTCAACCTCCTCACCGA

Fln Alignment:

AllPine_b_c40512___GRYANKQFRKAQMPIVERLVNSLMMNGRNNGKKQMAVRIV
A9NRE6________________GRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain