SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene197849

Length: 99 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene197849
TCTCACAGCGCTGAGTTGCATGGAGCATCGTGGAGGATGTGGTGCAGACAATGATTCAGGGGATGGTGCTGGGATTATGACTCGGATTCCATGGTCTCT

Ace file of the UniGene sp_v3.0_unigene197849 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Ferredoxin-dependent glutamate synthase; AltName: Full=FD-GOGAT	-	-	9.0e-10	87%
FL-Next	sp=Ferredoxin-dependent glutamate synthase, chloroplastic; Oryza sativa subsp. japonica (Rice).	-	-	0.0	80%
Sma3	Ferredoxin-dependent glutamate synthase	-	-	1.032e-29	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glutamate synthase (ferredoxin).	EC:1.4.7.1	-	1.117e-35	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Nitrogen metabolism	00910		1.117e-35	%

Source	Gene names
Sma3	At2g41220; At5g04140; CHLREDRAFT_140487; F13H10.23; F21E1_60; GLS1; GLSF; GLU; GLU1; GLU2; GSF1; GSVIVT00000656001; Grc000185; MICPUCDRAFT_70244; MICPUN_63658; MtrDRAFT_AC147961g17v2; OJ1477_F01.112; OsI_27183; OsJ_25434; P0047B07.133; PHYPADRAFT_180494;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	glutamate synthase activity	GO:0015930	Molecular Function	-
Sma3	glutamate synthase (ferredoxin) activity	GO:0016041	Molecular Function	-
Sma3	3 iron, 4 sulfur cluster binding	GO:0051538	Molecular Function	-
Sma3	glutamate biosynthetic process	GO:0006537	Biological Process	-
Sma3	glutamine metabolic process	GO:0006541	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to light stimulus	GO:0009416	Biological Process	-
Sma3	photorespiration	GO:0009853	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glutamine amidotransferase, class-II	IPR000583	-	-
Sma3	Glutamate synthase, alpha subunit, C-terminal	IPR002489	-	-
Sma3	Glutamate synthase, central-C	IPR002932	-	-
Sma3	Glutamate synthase, central-N	IPR006982	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Glutamine amidotransferase, type II	IPR017932	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G04140.2	-	5.0e-13	80%
RefSeq	Arabidopsis thaliana	NP_568134.1	ferredoxin-dependent glutamate synthase 1 [Arabidopsis thaliana]	6.0e-13	80%
RefSeq	Populus trichocarpa	XP_002308884.1	predicted protein [Populus trichocarpa]	3.0e-14	87%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q69RJ0

Fln msg: Distance to subject end: 1465 aas, your sequence is shorter than subject: 32 - 1615

Fln protein: LTALSCMEHRGGCGADNDSGDGAGIMTRIPWS

Protein Length: 33

Fln nts: TCTCACAGCGCTGAGTTGCATGGAGCATCGTGGAGGATGTGGTGCAGACAATGATTCAGGGGATGGTGCTGGGATTATGACTCGGATTCCATGGTCTCT

Fln Alignment:

AllPine_b_c39314___LTALSCMEHRGGCGADNDSGDGAGIMTRIPW
Q69RJ0________________LVALGCMEHRGGCGADNDSGDGSGLMSGIPW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain