SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene197687

Length: 241 nt

UniGene Fasta

>sp_v3.0_unigene197687
ACGAGCACGATGCTGCAGAGCCTGAGGAACCATCGGGAAGCCTCGTGGACGTATTCAAGTCACCCGTGATGCGGACGAGGATGGTTTTAATGGCGTTCATCTGGTTGGTCTGTGGTGTGGGTTACTATGGATTAAGCCTGAACGTGGTAAATCTGAGTACTAATTTATATGTGAGCGTTTTACTCAACGCAATCGCAGAAATGCCCGCCTACGCCCTCACGGCGGCCATGCTCGACAAATT

Ace file of the UniGene sp_v3.0_unigene197687

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	organic cation/carnitine transporter4 [Arabidopsis thaliana] dbj\|BAB02242.1\| organic anion transporter-like protein [Arabidopsis thaliana] gb\|AAR23714.1\| At3g20660 [Arabidopsis thaliana] dbj\|BAD44187.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE76	-	-	7.0e-05	38%
FL-Next	sp=Organic cation/carnitine transporter 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	57%

Source	Gene names
Sma3	At3g20660; GSVIVT00027463001; H0105C05.5; MtrDRAFT_AC172744g14v1; MtrDRAFT_AC172744g18v1; OSJNBb0015D13.11; Os04g0631100; OsI_17548; OsJ_16284; POPTRDRAFT_823032; RCOM_0987060;

Source	GOs	Term	Type	Identity
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LHQ6

Fln msg: Distance to subject end: 142 aas, your sequence is shorter than subject: 79 - 526

Fln protein: EHDAAEPEEPSGSLVDVFKSPVMRTRMVLMAFIWLVCGVGYYGLSLNVVNLSTNLYVSVLLNAIAEMPAYALTAAMLDK

Protein Length: 80

Fln nts: ACGAGCACGATGCTGCAGAGCCTGAGGAACCATCGGGAAGCCTCGTGGACGTATTCAAGTCACCCGTGATGCGGACGAGGATGGTTTTAATGGCGTTCATCTGGTTGGTCTGTGGTGTGGGTTACTATGGATTAAGCCTGAACGTGGTAAATCTGAGTACTAATTTATATGTGAGCGTTTTACTCAACGCAATCGCAGAAATGCCCGCCTACGCCCTCACGGCGGCCATGCTCGACAAATT

Fln Alignment:

AllPine_b_c38999___GSLVDVFKSPVMRTRMVLMAFIWLVCGVGYYGXXXXXXXXXXXXXXXXXXXAIAEMPAYALTAAMLDK
Q9LHQ6________________GSLKDVILSPLMRMRLVISVAISFTVSIVYYGLSLNVGNLKTNLYLNVFVNAVSEMPAFAITAVLLDK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain