SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene197576

Length: 235 nt

UniGene Fasta

>sp_v3.0_unigene197576
AAGATATACATCGAAGGTAACGCCTGGTCAGTTAGTCTGAAGAATATTTTGGCATGTGACTCGCTAACTCTGTTGATAACACCACAATACTATGAATTCTTTCTGAGAGGTTTATTTCCCCTATACCATTACTGGCCTGTGAGTGCCGATAAAAAGTGTGAATCCATACAATTCGCTGTTAACTGGGGAAACAATAATAAAGATGAGGCAAAATATATGCGACAGGCAGCCAGAG

Ace file of the UniGene sp_v3.0_unigene197576

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	KDEL motif-containing protein 1, putative n=1 Tax=Ricinus communis RepID=B9R9B2_RICCO	-	-	1.0e-23	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Sma3	KDEL motif-containing protein 1, putative	-	-	1.657e-20	-

Source	Gene names
Sma3	At1g07220; At2g45830; At2g45840; At3g48980; At3g61270; At3g61280; At3g61290; At5g23850; GSVIVT00000391001; GSVIVT00010512001; GSVIVT00010515001; GSVIVT00024098001; GSVIVT00026807001; GSVIVT00026809001; GSVIVT00026810001; GSVIVT00026813001; GSVIVT000268140

Source	GOs	Term	Type	Identity
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	adenosine deaminase activity	GO:0004000	Molecular Function	-
Sma3	RNA processing	GO:0006396	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Proteinase inhibitor I3, Kunitz legume	IPR002160	-	-
Sma3	Adenosine deaminase/editase	IPR002466	-	-
Sma3	Lipopolysaccharide-modifying protein	IPR006598	-	-
Sma3	Protein of unknown function DUF821, CAP10-like	IPR008539	-	-
Sma3	Thymidylate kinase, conserved site	IPR018095	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G23850.1	Arabidopsis thaliana protein of unknown function (DUF821) chr5:8038126-8040741 FORWARD LENGTH=542	2.0e-28	62%
RefSeq	Arabidopsis thaliana	NP_197774.1	uncharacterized protein [Arabidopsis thaliana]	2.0e-28	62%
RefSeq	Populus trichocarpa	XP_002321919.1	predicted protein, partial [Populus trichocarpa]	2.0e-31	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9F8

Fln msg: Distance to subject end: 106 aas, your sequence is shorter than subject: 78 - 492

Fln protein: KIYIEGNAWSVSLKNILACDSLTLLITPQYYEFFLRGLFPLYHYWPVSADKKCESIQFAVNWGNNNKDEAKYMRQAAR

Protein Length: 79

Fln nts: AAGATATACATCGAAGGTAACGCCTGGTCAGTTAGTCTGAAGAATATTTTGGCATGTGACTCGCTAACTCTGTTGATAACACCACAATACTATGAATTCTTTCTGAGAGGTTTATTTCCCCTATACCATTACTGGCCTGTGAGTGCCGATAAAAAGTGTGAATCCATACAATTCGCTGTTAACTGGGGAAACAATAATAAAGATGAGGCAAAATATATGCGACAGGCAGCCAGAG

Fln Alignment:

AllPine_b_c38814___KIYIEGNAWSVSLKNILACDSLTLLITPQYYEFFLRGLFPLYHYWPVSADKKCESIQFAVNWGNNNKDEAKYMRQAA
D5A9F8________________KIYIEGNAWSVSLKNIMACDSPTLLITPQYYDFYLRGLVPQRHYWPIRADKKCDSIQFAVDWGNKHPKEAMEIAKEA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain