SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene197506

Length: 149 nt

UniGene Fasta

>sp_v3.0_unigene197506
TCGTGTCCCTTTGCATTGTTCTGTCTCAGCTACCTAATCTTAACTCCATAGCAGGACTCTCTCTTATAGGTGCTATAACTGCAATTACCTACTGCACTATGGTCTGGGGTTTGTCCATAAGCAGACCTAGACCCTTGGGGATATCTTAT

Ace file of the UniGene sp_v3.0_unigene197506

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lysine histidine transporter-like 8 n=5 Tax=rosids RepID=LHTL8_ARATH	-	-	6.0e-15	85%
FL-Next	sp=Lysine histidine transporter-like 8; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	85%
Sma3	Lysine/histidine transporter	-	-	1.85e-07	-

Source	Gene names
Sma3	AATL1; At1g47670; F16N3.4; GSVIVT00010114001; GSVIVT00011880001; GSVIVT00014742001; GSVIVT00036239001; GSVIVT00036241001; LOC_Os12g30040; Os12g0485600; OsI_38347; OsJ_36108; POPTRDRAFT_753937; POPTRDRAFT_836427; PTRLHT10; PtrLHT4; RCOM_0615340; RCOM_15924

Source	GOs	Term	Type	e value	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	0.0	-
Sma3	integral to membrane	GO:0016021	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Amino acid transporter, transmembrane	IPR013057	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G47670.1	Transmembrane amino acid transporter family protein chr1:17536834-17539486 REVERSE LENGTH=519	2.0e-20	85%
RefSeq	Arabidopsis thaliana	NP_175198.1	Lysine histidine transporter-like 8 [Arabidopsis thaliana]	2.0e-20	85%
RefSeq	Populus trichocarpa	XP_002327101.1	lysine/histidine transporter [Populus trichocarpa]	4.0e-19	85%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SX98

Fln msg: Distance to subject end: 242 aas, your sequence is shorter than subject: 49 - 519

Fln protein: VSLCIVLSQLPNLNSIAGLSLIGAITAITYCTMVWGLSISRPRPLGISY

Protein Length: 50

Fln nts: TCGTGTCCCTTTGCATTGTTCTGTCTCAGCTACCTAATCTTAACTCCATAGCAGGACTCTCTCTTATAGGTGCTATAACTGCAATTACCTACTGCACTATGGTCTGGGGTTTGTCCATAAGCAGACCTAGACCCTTGGGGATATCTTAT

Fln Alignment:

AllPine_b_c38707___SLCIVLSQLPNLNSIAGLSLIGAITAITYCTMVWGLSISRPRPLGISY
Q9SX98________________SLCIVLSQLPNLNSIAGLSLIGAVTAITYSTMVWVLSVSQPRPATISY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain