SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene197489

Length: 248 nt

UniGene Fasta

>sp_v3.0_unigene197489
ATAAGAGCGATGTATATAGCTTTGGGGTTTTGCTGCTGGAGATCATGAGCGGCAGAAAGGCGCTGGACACCAATGGGAAGTCGGTCTCCCATTATCTCATCACGGATTGGGCATGGTCGCTGGTAAAAAGTGGCAGGACCAGTGAAATCATAGACGAGGAAATTCGGCAGAATGGGGCAATGAGCGTGATGGAGAGATTTGTTTTGGTGGGTATTTTGTGCTCGCATGTGATGGTGGCATTCAGACCT

Ace file of the UniGene sp_v3.0_unigene197489

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ser/Thr protein kinase isolog [Arabidopsis thaliana]	-	-	8.0e-20	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%

Source	Gene names
Sma3	At1g11050; B1065E10.29; GSVIVT00015440001; GSVIVT00026477001; GSVIVT00026479001; OJ1212_B02.6; Os01g0883000; Os05g0423500; OsI_04683; OsI_20023; OsJ_04311; OsJ_18600; PHYPADRAFT_12516; PHYPADRAFT_154284; POPTRDRAFT_1078580; POPTRDRAFT_552925; POPTRDRAFT_7

Source	GOs	Term	Type	Identity
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G11050.1	Protein kinase superfamily protein chr1:3681892-3683769 FORWARD LENGTH=625	3.0e-25	57%
RefSeq	Arabidopsis thaliana	NP_172572.1	putative receptor-like protein kinase [Arabidopsis thaliana]	4.0e-25	57%
RefSeq	Populus trichocarpa	XP_002306651.1	predicted protein [Populus trichocarpa]	5.0e-32	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACH5

Fln msg: Distance to subject end: 57 aas, your sequence is shorter than subject: 82 - 246

Fln protein: KSDVYSFGVLLLEIMSGRKALDTNGKSVSHYLITDWAWSLVKSGRTSEIIDEEIRQNGAMSVMERFVLVGILCSHVMVAFRP

Protein Length: 83

Fln nts: ATAAGAGCGATGTATATAGCTTTGGGGTTTTGCTGCTGGAGATCATGAGCGGCAGAAAGGCGCTGGACACCAATGGGAAGTCGGTCTCCCATTATCTCATCACGGATTGGGCATGGTCGCTGGTAAAAAGTGGCAGGACCAGTGAAATCATAGACGAGGAAATTCGGCAGAATGGGGCAATGAGCGTGATGGAGAGATTTGTTTTGGTGGGTATTTTGTGCTCGCATGTGATGGTGGCATTCAGACCT

Fln Alignment:

AllPine_b_c38680___KSDVYSFGVLLLEIMSGRKALDTNGKSVSHYLITDWAWSLVKSGRTSEIIDEEIRQNGAMSVMERFVLVGILCSHVMVAFRP
D5ACH5________________KSDVYSFGVLLLEIMSGRKALDTSGKSVPHYLITDWAWSLVKIGRTSEIIEERIRQSEANGEMERFVLVGILCSHVMVAFRP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain