SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene197399

Length: 290 nt

UniGene Fasta

>sp_v3.0_unigene197399
TCACAGATCTGCATACTCGGGAAGTTCATACAATCATGAGGATGAGCTGCAATGGCTGCCGCGTCTTGCGAAAGGGTTGTGGCGAATTCTGTGTTCTCAGGCCCTGCCTCCAGTGGATAAGGACACCAGAGTCGCAAGAAAATGCCACTACTTTCTTAGCGAAGTTTTATGGACGCGCTGGTCTGACTAATCTCATATCGAGGGTGCCTGAGCAATTGAGACCTGATATATTCAAGTCTCTTTTATACGATGCATGCGGCAGGATGGTTAATCCCATATATGGATCACTC

Ace file of the UniGene sp_v3.0_unigene197399

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF260 domain containing protein	-	-	5.0e-24	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	30%
Sma3	Seed specific protein Bn15D17A	-	-	5.128e-16	-

Source	Gene names
Sma3	ASL36; ASL37; ASL38; ASL39; ASL40; ASL41; GSVIVT00001451001; GSVIVT00014946001; GSVIVT00017674001; GSVIVT00019643001; GSVIVT00030342001; GSVIVT00038218001; LBD37; LBD38; LBD39; LBD40; LBD41; LBD42; LOC_Os03g33090; LOC_Os03g41330; OSJNBa0035N15.7; OSJNBb00

Source	GOs	Term	Type	e value	Identity
Sma3	response to gibberellin stimulus	GO:0009739	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Lateral organ boundaries, LOB	IPR004883	-	0.0	-
Sma3	Asymmetric leaves, AS2/LOB	IPR017414	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G67100.1	LBD40 LOB domain-containing protein 40 chr1:25053801-25054659 FORWARD LENGTH=233	5.99756e-43	75%
RefSeq	Arabidopsis thaliana	NP_176881.1	LOB domain-containing protein 40 [Arabidopsis thaliana]	8.00141e-43	75%
RefSeq	Populus trichocarpa	XP_002305815.1	predicted protein [Populus trichocarpa]	7.00649e-45	78%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTB0

Fln msg: Distance to subject end: 89 aas, atg_distance in limit (1-15): atg_distance = 1, No stop codon before M and low homology subject, your sequence is shorter than subject: 85 - 180

Fln protein: MRMSCNGCRVLRKGCGEFCVLRPCLQWIRTPESQENATTFLAKFYGRAGLTNLISRVPEQLRPDIFKSLLYDACGRMVNPIYGSL

Protein Length: 86

Fln nts: TCACAGATCTGCATACTCGGGAAGTTCATACAATC_-_ATGAGGATGAGCTGCAATGGCTGCCGCGTCTTGCGAAAGGGTTGTGGCGAATTCTGTGTTCTCAGGCCCTGCCTCCAGTGGATAAGGACACCAGAGTCGCAAGAAAATGCCACTACTTTCTTAGCGAAGTTTTATGGACGCGCTGGTCTGACTAATCTCATATCGAGGGTGCCTGAGCAATTGAGACCTGATATATTCAAGTCTCTTTTATACGATGCATGCGGCAGGATGGTTAATCCCATATATGGATCACTC

Fln Alignment:

AllPine_b_c38514___CNGCRVLRKGCGEFCVLRPCLQWIRTPESQENATTFLAKFYGRAGLTNLISRVPEQLRPDIFKSLLYDACGRMVNPIYG
A9NTB0________________CAACKILRRRCGEKCVLAPYF-----PSNDLHKFATAHRIFGASNIIKLLQELPAEGRTDAVSSMVYEANARLRDPLYG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain