SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene197101

Length: 300 nt

UniGene Fasta

>sp_v3.0_unigene197101
CTTTGGCTCTAAATCCACTGCTGAAGATGTCACTGCTCCCTGCAACCTTGACTCTCTAACAGCAATAGTCACTGGAGCTACCTCTGGTATTGGATCAGAAACTGCAAGAGTGTTGGCTAAACGAGGGGCAAGATTGATCATTCCGGCAAGGGATCTCAAAGCAGCAGAAGATGTAAAATCTCGTATTCAGAAAGAGATTCACACGGCAGACATTATATTGATGGAGATGGATCTCAGCTCCTTTGCTTCAATAAGAAGATTTGCTACAAATTTTGAATCCCTCGGCTTACCTCTCAATAT

Ace file of the UniGene sp_v3.0_unigene197101

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana] gb\|AAL27501.1\|AF439829_1 AT4g24050/T19F6_40 [Arabidopsis thaliana] gb\|AAB63619.1\| ribitol dehydrogenase isolog [Arabidopsis thaliana] emb\|CAB51648.1\| putative protein [Arabidops	-	-	3.0e-30	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	Short-chain dehydrogenase, putative	-	-	7.251e-19	-

Source	ECs	Term	Type	e value	Identity
Sma3	Protochlorophyllide reductase.	EC:1.3.1.33	-	2.106e-19	-

Source	KEGGs	Term	e value	Identity
Sma3	Porphyrin and chlorophyll metabolism	00860	2.106e-19	%
Sma3	Metabolic pathways	01100	2.106e-19	%
Sma3	Biosynthesis of secondary metabolites	01110	2.106e-19	%

Source	Gene names
Sma3	6J23.19; AT4g11410; AT4g23430; AT4g24050; At1g64590; At2g37540; At4g11410; At4g23420; At4g23430; At4g24050; At5g02540; At5g50130; F16G20.130; GSVIVT00000434001; GSVIVT00006681001; GSVIVT00016020001; GSVIVT00023046001; GSVIVT00037681001; GSVIVT00037682001;

Source	GOs	Term	Type	Identity
Sma3	chloroplast inner membrane	GO:0009706	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	iron-sulfur cluster binding	GO:0051536	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	cell death	GO:0008219	Biological Process	-
Sma3	iron-sulfur cluster assembly	GO:0016226	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	NIF system FeS cluster assembly, NifU, C-terminal	IPR001075	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Mlo-related protein	IPR004326	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G24050.1	NAD(P)-binding Rossmann-fold superfamily protein chr4:12497287-12499661 FORWARD LENGTH=332	1.0e-38	66%
RefSeq	Arabidopsis thaliana	NP_194136.1	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]	2.0e-38	66%
RefSeq	Populus trichocarpa	XP_002303676.1	predicted protein, partial [Populus trichocarpa]	8.0e-37	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NTW7

Fln msg: Distance to subject end: 206 aas, your sequence is shorter than subject: 99 - 322

Fln protein: FGSKSTAEDVTAPCNLDSLTAIVTGATSGIGSETARVLAKRGARLIIPARDLKAAEDVKSRIQKEIHTADIILMEMDLSSFASIRRFATNFESLGLPLN

Protein Length: 100

Fln nts: CTTTGGCTCTAAATCCACTGCTGAAGATGTCACTGCTCCCTGCAACCTTGACTCTCTAACAGCAATAGTCACTGGAGCTACCTCTGGTATTGGATCAGAAACTGCAAGAGTGTTGGCTAAACGAGGGGCAAGATTGATCATTCCGGCAAGGGATCTCAAAGCAGCAGAAGATGTAAAATCTCGTATTCAGAAAGAGATTCACACGGCAGACATTATATTGATGGAGATGGATCTCAGCTCCTTTGCTTCAATAAGAAGATTTGCTACAAATTTTGAATCCCTCGGCTTACCTCTCAATAT

Fln Alignment:

AllPine_b_c37973___FGSKSTAEDVTAPCNLDSLTAIVTGATSGIGSETARVLAKRGARLIIPARDLKAAEDVKSRIQKEIHTADIILMEMDLSSFASIRRFATNFESLGLPLN
A9NTW7________________FGSKSTAEDVTCACNLQSLTAIITGATSGIGAETARVLAKRGARLIIPARNLKAAEDVKSRIQKEIPTAEIIVMELDLSSFASIRRFATNFNSCDLPLN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain