SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene196922

Length: 332 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene196922
TAGTAAGAACCTATCAAAACCTGAGCTAAACTATACTGTGATAAAAAAGGAATTCCTGGCTATTGTGCATTCATTGAACAAATTTAGGCATTACATTATAGGCTATCAAACATTTGTGCATACTGATTATGCTGCAATCAAATATTTAATGAAAAAATTAGATGCAAAATCTAGAATTATAAGATGGTTGCTTCTATTAGAACAGTTTGATCTAACTATTGTTGATAAGCTTGGTAAGGAAAATGTTGTTGCTGACTTTCTATCTAGAATGAATCTATGTGGAGGTGAAGAAGGAATGGTGGATGACGAGTTATCAGATGAGCATTTGTTTT

Ace file of the UniGene sp_v3.0_unigene196922 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	OSJNBa0091C12.6 protein n=2 Tax=Oryza sativa RepID=Q7XWS6_ORYSJ	-	-	2.0e-24	49%
FL-Next	tr=Putative uncharacterized protein; Beta vulgaris (Sugar beet).	-	-	0.0	51%

Source	Gene names
Sma3	19.t00014; 19.t00017; GSVIVT00000833001; GSVIVT00005459001; GSVIVT00009118001; H0211F06-OSIGBa0153M17.7; LOC_Os10g17400; OSJNAa0053D03.14; OSJNBa0004A10.21; OSJNBa0091C12.6; VITISV_000420; VITISV_000916; VITISV_001231; VITISV_001382; VITISV_001646; VITISV

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	KID repeat	IPR003900	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Nitrite/sulphite reductase iron-sulphur/siroheam-binding site	IPR006066	-	-
Sma3	Viral nucleic acid binding	IPR008891	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	DNA methylase, N-4 cytosine-specific, conserved site	IPR017985	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: E2DN01

Fln msg: Distance to subject end: 388 aas, your sequence is shorter than subject: 110 - 1717

Fln protein: SKNLSKPELNYTVIKKEFLAIVHSLNKFRHYIIGYQTFVHTDYAAIKYLMKKLDAKSRIIRWLLLLEQFDLTIVDKLGKENVVADFLSRMNLCGGEEGMVDDELSDEHLF

Protein Length: 111

Fln nts: TAGTAAGAACCTATCAAAACCTGAGCTAAACTATACTGTGATAAAAAAGGAATTCCTGGCTATTGTGCATTCATTGAACAAATTTAGGCATTACATTATAGGCTATCAAACATTTGTGCATACTGATTATGCTGCAATCAAATATTTAATGAAAAAATTAGATGCAAAATCTAGAATTATAAGATGGTTGCTTCTATTAGAACAGTTTGATCTAACTATTGTTGATAAGCTTGGTAAGGAAAATGTTGTTGCTGACTTTCTATCTAGAATGAATCTATGTGGAGGTGAAGAAGGAATGGTGGATGACGAGTTATCAGATGAGCATTTGTTTT

Fln Alignment:

AllPine_b_c37660___SKNLSKPELNYTVIKKEFLAIVHSLNKFRHYIIGYQTFVHTDYAAIKYLMKKLDAKSRIIRWLLLLEQFDLTIVDKLGKENVVADFLSRMNLCGGEEGM-VDDELSDEHL
E2DN01________________SKTLDEAQVNYATTEKELLAVVYALDKFRTYLLGSKVIVYTDHAALKYLLAKKEAKPRLIRWILLLQEFDLEIRDKKGAENVVADHLSRLQYADMEEGLPIDDSFPDDKL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain