SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene196472

Length: 310 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene196472
TAGACCACTATATCAGATCAAGATAGCAAGTTCCCAAGAGCATTTTGGTAAATCCTTTGGTCATTGTTGGACACCAAGCTCACCAAGTCAACTGCATTCCACCCTCAAACTAATGGCGAGACAGAGGTCGTCAACAGGATGATTGTGCACATACTACACATGTATAACTCTAAGCATCTGCGAACATGGGATGAGAGTCTTCCCTATGTGCAAGACAATTATAAGAGAGCTCTCCATAGCTTGACTAGCCACAACCACTTTGAAGTGGGCCTGGGAATTTCAACCATTATGTCCCCTTGATGTTGCAATA

Ace file of the UniGene sp_v3.0_unigene196472 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative retrotransposon polyprotein n=1 Tax=Ipomoea batatas RepID=Q5MG92_IPOBA	-	-	3.0e-21	51%
FL-Next	tr=Putative uncharacterized protein; Asparagus officinalis (Garden asparagus).	-	-	0.0	55%

Source	Gene names
Sma3	18.t00011;

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q2AA76

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 173 aas, your sequence is shorter than subject: 100 - 887

Fln protein: *TTISDQDSKFPRAFW*ILWSLLDTKLTKSTAFHPQTNGETEVVNRMIVHILHMYNSKHLRTWDESLPYVQDNYKRALHSLTSHNHFEVGLGISTIMSP*

Protein Length: 101

Fln nts: TAGACCACTATATCAGATCAAGATAGCAAGTTCCCAAGAGCATTTTGGTAAATCCTTTGGTCATTGTTGGACACCAAGCTCACCAAGTCAACTGCATTCCACCCTCAAACTAATGGCGAGACAGAGGTCGTCAACAGGATGATTGTGCACATACTACACATGTATAACTCTAAGCATCTGCGAACATGGGATGAGAGTCTTCCCTATGTGCAAGACAATTATAAGAGAGCTCTCCATAGCTTGACTAGCCACAACCACTTTGAAGTGGGCCTGGGAATTTCAACCATTATGTCCCCTTGATGTTGCAATA

Fln Alignment:

AllPine_b_c36805___ISDQDSKFPRAFW*ILWSLLDTKLTKSTAFHPQTNGETEVVNRMIVHILHMYNSKHLRTWDESLPYVQDNYKRALHSLTSHNHFEVGLG
Q2AA76________________ISDRDRRFLRHFWDSLWSLMDTRQKKSTIFHPQTDGQTEVVNRTIIYMLRGYNFKHPKIWDESLPYLQFVFNRAIHGSSGKSPFETCYG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain