SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene196315

Length: 200 nt

UniGene Fasta

>sp_v3.0_unigene196315
GAAAGGGAACCTAGGTGATCCCCATCTGGCCAGTGATATCTGGAATCTCACCAGAGAACAAGGTAATAAACTTCTTGCAAGTAGGTTTCGTGGTGATAGTCTTTATATATGTGATTGGCCTGGTTGTTTACACTCCGAAGAGAAGAGAAACTATAGATTATTTAGGGGTATATTTAAGAATTTCAGGAATTCTTATGTCT

Ace file of the UniGene sp_v3.0_unigene196315

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phytochrome A-associated F-box protein, putative n=1 Tax=Ricinus communis RepID=B9SAQ8_RICCO	-	-	5.0e-24	84%
FL-Next	sp=Phytochrome A-associated F-box protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	77%

Source	Gene names
Sma3	At4g02440; EID1; GSVIVT00027993001; OSJNBb0111K12.4; OsJ_18253; P0683B02.9; P0686B10.15; PHYPADRAFT_148210; PHYPADRAFT_83949; POPTRDRAFT_1099201; POPTRDRAFT_552435; RCOM_1178010; T14P8.22; VITISV_000965;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	red, far-red light phototransduction	GO:0009585	Biological Process	-
Sma3	red or far-red light signaling pathway	GO:0010017	Biological Process	-
Sma3	regulation of photomorphogenesis	GO:0010099	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-
Sma3	photoperiodism, flowering	GO:0048573	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G02440.1	EID1 F-box family protein chr4:1072555-1073565 FORWARD LENGTH=336	2.0e-28	77%
RefSeq	Arabidopsis thaliana	NP_192153.1	phytochrome A-associated F-box protein [Arabidopsis thaliana]	3.0e-28	77%
RefSeq	Populus trichocarpa	XP_002320346.1	f-box family protein [Populus trichocarpa]	4.0e-30	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8LEA8

Fln msg: Distance to subject end: 69 aas, your sequence is shorter than subject: 66 - 336

Fln protein: KGNLGDPHLASDIWNLTREQGNKLLASRFRGDSLYICDWPGCLHSEEKRNYRLFRGIFKNFRNSYV

Protein Length: 67

Fln nts: GAAAGGGAACCTAGGTGATCCCCATCTGGCCAGTGATATCTGGAATCTCACCAGAGAACAAGGTAATAAACTTCTTGCAAGTAGGTTTCGTGGTGATAGTCTTTATATATGTGATTGGCCTGGTTGTTTACACTCCGAAGAGAAGAGAAACTATAGATTATTTAGGGGTATATTTAAGAATTTCAGGAATTCTTATGTCT

Fln Alignment:

AllPine_b_c36524___HLASDIWNLTREQGNKLLASRFRGDSLYICDWPGCLHSEEKRNYRLFRGIFKNFRNSYV
Q8LEA8________________HLASGGWNLSREQGNKLLASRFRGDCLYICNWPGCIHVEEKRNYMLFRGVFKDFKRSRV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain