SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene195896

Length: 541 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene195896
TAAGGTATTGTCCAAATGATTTATGGGTTGCAGATGGAACAGTTGGAACCATTTTGACTGCAATGTGAACGACAGTGTCATTAGGGAGACAGCTGATGCATTTATATCAACTGGACTCTCTAAACTTGGGTACAAATATATCAATATAGATGACTGCTGGGCCGAGCCACAAAGAGACAAAGATGGAAAGTTGATTCCTCGTGCTTTGACGTTTCCATTCGGCATCAAGGCCCTTGCTGACTATGTGCATGAGAAGGGTCTGAAGATTGGCATATATTCAGATGCAGGGTAAGCTCAGCAAGGCTTTCCTATTACTGAAAACCATAAACCATTCAGGACCTTACGTGAGCTTACCTGATCTCAGGCAATACACATGTCAAAAGCAACCTGGCTCATTAGGATTTGAGGAAGAAGATGCCCGGACATTCGCTGAATGGGGTATCGACTATCTCAAGTATGATAACTGTTTCGATGATGGTTCAAAACCTGAAGTCAGGTACCCAAGGATGAGGGATGCACTTCTTAAGACAGACCATCCGAT

Ace file of the UniGene sp_v3.0_unigene195896 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Alpha-galactosidase-like protein n=3 Tax=Arabidopsis RepID=Q8RWB9_ARATH	-	-	0.0	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Sma3	Alpha-galactosidase	-	-	1.625e-36	-

Source	ECs	Term	Type	e value	Identity
Sma3	Alpha-galactosidase.	EC:3.2.1.22	-	3.92364e-44	-

Source	KEGGs	Term	e value	Identity
Sma3	Galactose metabolism	00052	3.92364e-44	%
Sma3	Glycerolipid metabolism	00561	3.92364e-44	%
Sma3	Sphingolipid metabolism	00600	3.92364e-44	%
Sma3	Glycosphingolipid biosynthesis - globo series	00603	3.92364e-44	%

Source	Gene names
Sma3	AGA1; At3g56310; At5g08370; At5g08380; CHLREDRAFT_116873; F18O21_270; F8L15_100; F8L15_110; GGT-1; GLA; GSVIVT00002617001; GSVIVT00002618001; GSVIVT00002619001; GSVIVT00011770001; GSVIVT00029420001; LOC_Os10g35070; LOC_Os10g35110; LeaGal; OJ1205_F02.7; OJ

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	alpha-galactosidase activity	GO:0004557	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	positive regulation of flower development	GO:0009911	Biological Process	-
Sma3	leaf morphogenesis	GO:0009965	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, clan GH-D	IPR000111	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Glycoside hydrolase, family 27	IPR002241	-	-
Sma3	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G08380.1	AtAGAL1, AGAL1 alpha-galactosidase 1 chr5:2694851-2697616 REVERSE LENGTH=410	70%
RefSeq	Arabidopsis thaliana	NP_196455.1	alpha-galactosidase 1 [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002316426.1	predicted protein, partial [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWJ8

Fln msg: Separated hits, possible frame ERROR between 289 and 357, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 209 aas, your sequence is shorter than subject: 180 - 399

Fln protein: KVLSK*FMGCRWNSWNHFDCNVNDSVIRETADAFISTGLSKLGYKYINIDDCWAEPQRDKDGKLIPRALTFPFGIKALADYVHEKGLKIGIYSDAxxxxxxxxxxxxxxxxxxxxxxxxDLRQYTCQKQPGSLGFEEEDARTFAEWGIDYLKYDNCFDDGSKPEVRYPRMRDALLKTDHP

Protein Length: 181

Fln nts: TAAGGTATTGTCCAAATGATTTATGGGTTGCAGATGGAACAGTTGGAACCATTTTGACTGCAATGTGAACGACAGTGTCATTAGGGAGACAGCTGATGCATTTATATCAACTGGACTCTCTAAACTTGGGTACAAATATATCAATATAGATGACTGCTGGGCCGAGCCACAAAGAGACAAAGATGGAAAGTTGATTCCTCGTGCTTTGACGTTTCCATTCGGCATCAAGGCCCTTGCTGACTATGTGCATGAGAAGGGTCTGAAGATTGGCATATATTCAGATGCAGGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGATCTCAGGCAATACACATGTCAAAAGCAACCTGGCTCATTAGGATTTGAGGAAGAAGATGCCCGGACATTCGCTGAATGGGGTATCGACTATCTCAAGTATGATAACTGTTTCGATGATGGTTCAAAACCTGAAGTCAGGTACCCAAGGATGAGGGATGCACTTCTTAAGACAGACCATCCGAT

Fln Alignment:

AllPine_b_c35797___WNSWNHFDCNVNDSVIRETADAFISTGLSKLGYKYINIDDCWAEPQRDKDGKLIPRALTFPFGIKALADYVHEKGLKIGIYSDAGxxxxxxxxxxxxxxxxxxxxxxxDLRQYTCQKQPGSLGFEEEDARTFAEWGIDYLKYDNCFDDGSKPEVRYPRMRDALLKTDHP
A9NWJ8________________WNSWNHFGCHINEDVIRETADALVSTGLSKLGYQYVNIDDCWAELNRDSNGRLVASASRFPSGIKALADYVHSKGLKLGIYSDAGxxxxxxxxxxxxxxxxxxxxxxxDAGYYTCQKQPGSLGHEQVDADTFAYWGVDYLKYDNCYNDGSKPENRYPKMRDALLSTRRP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain