SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene195596

Length: 187 nt

UniGene Fasta

>sp_v3.0_unigene195596
TCTGCACCTGCTGGGACAGCTTCCACACCAAGCACTGGCTGCTCTTTCTCTGAAATTCGGGCCTCTTATGTCGCTCCGACTCGGCTCTGCTCTTACCTTAGTAGTTTCTTCACCTGATATGGCCAAGGAATTTCTCAAGACACATGATCTGCTTTTTGCTAGCAGACCTCCCTCCGCAGCCGCTAAT

Ace file of the UniGene sp_v3.0_unigene195596

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cytochrome P450 [Pyrus communis]	-	-	5.0e-14	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	Cytochrome P450	-	-	3.205e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:1.14.-.-	-	9.852e-09	-
Sma3	Licodione synthase.	EC:1.14.13.87	-	6.047e-06	-

Source	Gene names
Sma3	Asp-3; At3g48290; At3g48320; CYP71A10; CYP71A21; CYP71A24; CYP71A9; CYP71AJ2; CYP71D4; CYP71D6; CYP71D7; CYP736A3v1; CYP736A4v1; CYP736A5v1; CYP736A8v1; CYP736A8v2; CYP736A8v3; CYP736A9; CYP92A24; CYP92A25; GSVIVT00015943001; GSVIVT00016433001; GSVIVT0001

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	GO:0016702	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3		GO:0050381	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Protein of unknown function DUF247, plant	IPR004158	-	-
Sma3	Lipoxygenase, C-terminal	IPR013819	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G48290.2	CYP71A24 cytochrome P450, family 71, subfamily A, polypeptide 24 chr3:17882596-17884134 FORWARD LENGTH=512	2.0e-15	60%
RefSeq	Arabidopsis thaliana	NP_680108.2	cytochrome P450 71A24 [Arabidopsis thaliana]	2.0e-15	60%
RefSeq	Populus trichocarpa	XP_002310005.1	cytochrome P450 [Populus trichocarpa]	4.0e-20	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQV6

Fln msg: Distance to subject end: 398 aas, your sequence is shorter than subject: 62 - 517

Fln protein: LHLLGQLPHQALAALSLKFGPLMSLRLGSALTLVVSSPDMAKEFLKTHDLLFASRPPSAAAN

Protein Length: 63

Fln nts: TCTGCACCTGCTGGGACAGCTTCCACACCAAGCACTGGCTGCTCTTTCTCTGAAATTCGGGCCTCTTATGTCGCTCCGACTCGGCTCTGCTCTTACCTTAGTAGTTTCTTCACCTGATATGGCCAAGGAATTTCTCAAGACACATGATCTGCTTTTTGCTAGCAGACCTCCCTCCGCAGCCGCTAAT

Fln Alignment:

AllPine_b_c35344___LHLLGQLPHQALAALSLKFGPLMSLRLGSALTLVVSSPDMAKEFLKTHDLLFASRPPSAA
C0PQV6________________LHLMGRLQHKALAALSVKYGPLFSLRLGSALTLVVSSPDMAKEFLKTHDLVFASRPPSTA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain