SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene195483

Length: 210 nt

UniGene Fasta

>sp_v3.0_unigene195483
AATCAAGGGAGGGCGAAATAGAGAGAAACCTAACCTCTGTATCAATCAGGAACATTCCTGCAGAGGAGGATGATCTCATGCCATGCATCTCAGGGACTTGTCCCGATATGTGTCCTGCTAAGGAGAGGGCACAGAGAGAGAGACTGGGAGACTTGGCAGTTTTTGAAAGGTTGAATGGAGACCCACGGAAGACTTCTGCTAGCATTGCTG

Ace file of the UniGene sp_v3.0_unigene195483

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SAC3/GANP/Nin1/mts3/eIF-3 p25 family protein [Arabidopsis thaliana] gb\|AAK62425.1\|AF386980_1 Unknown protein [Arabidopsis thaliana] gb\|AAP37824.1\| At3g54370 [Arabidopsis thaliana] gb\|AEE79222.1\| SAC3/GANP/Nin1/mts3/eIF-3 p25 family protein [Arabidopsis th	-	-	3.0e-07	65%
FL-Next	tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice).	-	-	0.0	74%
Sma3	Leng8 protein, putative	-	-	5.848e-06	-

Source	Gene names
Sma3	OsI_11579; OsJ_10850; POPTRDRAFT_178300; RCOM_0622260;

Source	InterPros	Term	Type	e value	Identity
Sma3	SAC3/GANP/Nin1/mts3/eIF-3 p25	IPR005062	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G54380.1	SAC3/GANP/Nin1/mts3/eIF-3 p25 family chr3:20133985-20136752 REVERSE LENGTH=406	7.0e-11	65%
RefSeq	Arabidopsis thaliana	NP_191006.3	SAC3/GANP/Nin1/mts3/eIF-3 p25 family protein [Arabidopsis thaliana]	8.0e-11	65%
RefSeq	Populus trichocarpa	XP_002299171.1	predicted protein, partial [Populus trichocarpa]	5.0e-14	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B8APH3

Fln msg: Distance to subject end: 263 aas, your sequence is shorter than subject: 69 - 375

Fln protein: SREGEIERNLTSVSIRNIPAEEDDLMPCISGTCPDMCPAKERAQRERLGDLAVFERLNGDPRKTSASIA

Protein Length: 70

Fln nts: AATCAAGGGAGGGCGAAATAGAGAGAAACCTAACCTCTGTATCAATCAGGAACATTCCTGCAGAGGAGGATGATCTCATGCCATGCATCTCAGGGACTTGTCCCGATATGTGTCCTGCTAAGGAGAGGGCACAGAGAGAGAGACTGGGAGACTTGGCAGTTTTTGAAAGGTTGAATGGAGACCCACGGAAGACTTCTGCTAGCATTGCTG

Fln Alignment:

AllPine_b_c35166___PCISGTCPDMCPAKERAQRERLGDLAVFERLNGDPRKTSASIA
B8APH3________________PPIVGSCPDMCPARERAQRERLRDLAVFERVGGDPARTSPSLA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain