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UniGene Name: sp_v3.0_unigene195101
Length: 156 nt
 UniGene Fasta
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| >sp_v3.0_unigene195101
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Ace file of the UniGene sp_v3.0_unigene195101
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If you push the Download ace button, you will download an ace file of this UniGene.
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| Annotations |
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| Source | Descriptions | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| AutoFact | alanyl-tRNA synthetase [Arabidopsis thaliana] sp|Q9FFC7.2|SYAP_ARATH RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic; AltName: Full=Alanine--tRNA ligase; Short=AlaRS; AltName: Full=Protein EMBRYO DEFECTIVE 1030; AltName: Full=Protein EMBRYO D | - | - | 2.0e-08 | 63% |
| FL-Next | sp=Probable alanine--tRNA ligase, chloroplastic; Oryza sativa subsp. japonica (Rice). | - | - | 0.0 | 68% |
| Source | Gene names |
|---|---|
| Sma3 | GSVIVT00036226001; OsI_22356; OsJ_20798; PHYPADRAFT_174459; POPTRDRAFT_821063; RCOM_0235110; |
| Source | GOs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | cytoplasm | GO:0005737 | Cellular Component | 0.0 | - |
| Sma3 | mitochondrion | GO:0005739 | Cellular Component | 0.0 | - |
| Sma3 | chloroplast stroma | GO:0009570 | Cellular Component | 0.0 | - |
| Sma3 | membrane | GO:0016020 | Cellular Component | 0.0 | - |
| Sma3 | nucleic acid binding | GO:0003676 | Molecular Function | 0.0 | - |
| Sma3 | alanine-tRNA ligase activity | GO:0004813 | Molecular Function | 0.0 | - |
| Sma3 | ATP binding | GO:0005524 | Molecular Function | 0.0 | - |
| Sma3 | ligase activity, forming aminoacyl-tRNA and related compounds | GO:0016876 | Molecular Function | 0.0 | - |
| Sma3 | translation | GO:0006412 | Biological Process | 0.0 | - |
| Sma3 | alanyl-tRNA aminoacylation | GO:0006419 | Biological Process | 0.0 | - |
| Sma3 | embryo development ending in seed dormancy | GO:0009793 | Biological Process | 0.0 | - |
| Sma3 | tRNA aminoacylation | GO:0043039 | Biological Process | 0.0 | - |
| Source | InterPros | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Alanyl-tRNA synthetase, class IIc | IPR002318 | - | 0.0 | - |
| Sma3 | Phosphoesterase, DHHA1 | IPR003156 | - | 0.0 | - |
| Sma3 | Threonyl/alanyl tRNA synthetase, SAD | IPR012947 | - | 0.0 | - |
| Sma3 | Alanyl-tRNA synthetase, class IIc, N-terminal | IPR018164 | - | 0.0 | - |
| Sma3 | Alanyl-tRNA synthetase, class IIc, core domain | IPR018165 | - | 0.0 | - |
| Sma3 | EF-Hand 1, calcium-binding site | IPR018247 | - | 0.0 | - |
| Source | Species | ID | Description | e value | Identity |
|---|---|---|---|---|---|
| ATG | Arabidoptis thaliana | AT5G22800.1 | EMB86, EMB1030, EMB263 Alanyl-tRNA synthetase, class IIc chr5:7616221-7619961 REVERSE LENGTH=978 | 2.0e-12 | 63% |
| RefSeq | Arabidopsis thaliana | NP_680210.2 | alanyl-tRNA synthetase [Arabidopsis thaliana] | 3.0e-12 | 63% |
| RefSeq | Populus trichocarpa | XP_002313683.1 | predicted protein [Populus trichocarpa] | 5.0e-14 | 65% |
| Full-Lengther Next Prediction |
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Fln status: Internal
Fln database: sp_plants
Fln subject: B9FSH5
Fln msg: Distance to subject end: 64 aas, your sequence is shorter than subject: 51 - 932
Fln protein:
T
Protein Length:
52
Fln nts:
A
Fln Alignment:
AllPine_b_c34462___RVVVANMDDLDAESLKVAAEHLLTLLDDPAAIVLGSCPGDGKVSFVA
B9FSH5________________RVVVENMGDVDADGLKSAAEYLVDTLEDPAAVILGSSPGDGKVSLVA
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain
