SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene194766

Length: 239 nt

UniGene Fasta

>sp_v3.0_unigene194766
CATCATTTATCGTTGGTGGGGAAACCCTCTCATTTTCCAGTCCTTGTGATTATTTCTCAACTGGAAAAGTTAAAGCAACAACCCTTTCCCTCTCCGTATTGGTCGCCATTGAAATGTTCAACTCATTGAATGCTCTATCTGAGGATAACAGTTTGCTCACCATGCCACCCTGGACTAATCCTTGGCTATTGCTGGCATTGTCAGTTTCATTTGGACTACACTTTCTAGTCCTATATGTG

Ace file of the UniGene sp_v3.0_unigene194766

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calcium-transporting atpase 4, endoplasmic reticulum-type, putative n=1 Tax=Ricinus communis RepID=B9SBC8_RICCO	-	-	1.0e-29	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Sma3	Endoplasmic reticulum [ER]-type calcium ATPase	-	-	8.612e-10	-

Source	ECs	Term	Type	e value	Identity
Sma3	Calcium-transporting ATPase.	EC:3.6.3.8	-	1.203e-14	-

Source	Gene names
Sma3	ACA3; ACA5; A_TM018A10.4; At1g07670; At1g07810; At4g00900; CA1; CA6; CA7; CHLREDRAFT_77047; ECA1; ECA2; ECA4; F24B9.9; GSVIVT00008659001; GSVIVT00023099001; GSVIVT00024422001; LCA1; LOC_Os03g17310; MICPUCDRAFT_36018; MICPUCDRAFT_50020; MICPUN_97933; OSTLU

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	integral to endoplasmic reticulum membrane	GO:0030176	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	calcium-transporting ATPase activity	GO:0005388	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	GO:0015662	Molecular Function	-
Sma3	ATP biosynthetic process	GO:0006754	Biological Process	-
Sma3	cation transport	GO:0006812	Biological Process	-
Sma3	calcium ion transport	GO:0006816	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	ATPase, P-type, H+ transporting proton pump	IPR000695	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	ATPase, P-type cation-transporter, N-terminal	IPR004014	-	-
Sma3	ATPase, P-type, calcium-transporting	IPR005782	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type cation-transporter, C-terminal	IPR006068	-	-
Sma3	ATPase, P-type cation exchange, alpha subunit	IPR006069	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G07810.1	ECA1, ATECA1, ACA3 ER-type Ca2+-ATPase 1 chr1:2416681-2420572 FORWARD LENGTH=1061	2.0e-35	77%
RefSeq	Arabidopsis thaliana	NP_172259.1	Ca2+-transporting ATPase [Arabidopsis thaliana]	2.0e-35	77%
RefSeq	Populus trichocarpa	XP_002320213.1	endoplasmic reticulum [ER]-type calcium ATPase [Populus trichocarpa]	4.0e-36	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AEI1

Fln msg: Distance to subject end: 54 aas, your sequence is shorter than subject: 79 - 340

Fln protein: SFIVGGETLSFSSPCDYFSTGKVKATTLSLSVLVAIEMFNSLNALSEDNSLLTMPPWTNPWLLLALSVSFGLHFLVLYV

Protein Length: 80

Fln nts: CATCATTTATCGTTGGTGGGGAAACCCTCTCATTTTCCAGTCCTTGTGATTATTTCTCAACTGGAAAAGTTAAAGCAACAACCCTTTCCCTCTCCGTATTGGTCGCCATTGAAATGTTCAACTCATTGAATGCTCTATCTGAGGATAACAGTTTGCTCACCATGCCACCCTGGACTAATCCTTGGCTATTGCTGGCATTGTCAGTTTCATTTGGACTACACTTTCTAGTCCTATATGTG

Fln Alignment:

AllPine_b_c33855___FIVGGETLSF-SSPCDYFSTGKVKATTLSLSVLVAIEMFNSLNALSEDNSLLTMPPWTNPWLLLALSVSFGLHFLVLYV
D5AEI1________________FNAGSHVFSFDANPCDYFSTGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLVVMPPWVNPWLLLAMSVSFGLHFLILYV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain