SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene194277

Length: 225 nt

UniGene Fasta

>sp_v3.0_unigene194277
AAGGAAGGGAATGAATTAATGGAGATTGGCAAAGTGAGGGAAGCACTTGTTCTCTATGAAAAGATAATGGACGAAATGGTGTTCCAGAGTGAACTCCATGGTCTTGCAGCCTTGCAATGGTCCGTCTGTTTGGACTCTATTGGAAGGTTGGATGAAGCTCGAATGATGTATGAGAAGCTTGGCTCACATCCAAATGTTCCAATACGAAAGAAAGCAAAGCACATT

Ace file of the UniGene sp_v3.0_unigene194277

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tymo_45kd_70kd domain containing protein	-	-	0.0001	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%

Source	Gene names
Sma3	At2g38780; CM0216.540.nc; GSVIVT00005502001; GSVIVT00031030001; OsI_19769; OsJ_18363; PHYPADRAFT_110660; POPTRDRAFT_708533; RCOM_1453340;

Source	InterPros	Term	Type	e value	Identity
Sma3	Calmodulin-binding domain, plant	IPR012417	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G38780.1	" unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 58 Blast hits to 58 proteins in 23 species: Archae	2.0e-26	63%
RefSeq	Arabidopsis thaliana	NP_181412.2	uncharacterized protein [Arabidopsis thaliana]	2.0e-26	63%
RefSeq	Populus trichocarpa	XP_002297759.1	predicted protein [Populus trichocarpa]	9.0e-25	58%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LM07

Fln msg: STOP codon was not found. Distance to subject end: 6 aas, your sequence is shorter than subject: 75 - 382

Fln protein: KEGNELMEIGKVREALVLYEKIMDEMVFQSELHGLAALQWSVCLDSIGRLDEARMMYEKLGSHPNVPIRKKAKHI

Protein Length: 76

Fln nts: AAGGAAGGGAATGAATTAATGGAGATTGGCAAAGTGAGGGAAGCACTTGTTCTCTATGAAAAGATAATGGACGAAATGGTGTTCCAGAGTGAACTCCATGGTCTTGCAGCCTTGCAATGGTCCGTCTGTTTGGACTCTATTGGAAGGTTGGATGAAGCTCGAATGATGTATGAGAAGCTTGGCTCACATCCAAATGTTCCAATACGAAAGAAAGCAAAGCACATT

Fln Alignment:

AllPine_b_c33055___KEGNELMEIGKVREALVLYEKIMDEMVFQSELHGLAALQWSVCLDSIGRLDEARMMYEKLGSHPNVPIRKKAKHI
B8LM07________________KEGNELMEIGKLREALVLYEKIMEEMVFQSELHGLAALQWSVCLDSISRSDEARIMYEKLRSHPNGSIRKKAKQI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain