SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene194258

Length: 427 nt

UniGene Fasta

>sp_v3.0_unigene194258
TTGTAGTGGACTGTTTGGAGGGGCTGAAAGGCCTTAAACAAGTTCAGATGAGGATTATTTAGCCAATGAAGAAGTCTCCTTGAAGAAAAGAAAAGGTCCTTAGTTGTGAACAATATTTTTAGGCCTCTTTGTGAGGTTTTTGTTGGTAAAATGTGAGAGGAAAGGCACAAAACCTTCTTTTGGACCCCATGTGTTGCACATTGCATAGACCTCATGCTTGAGGATATTGGTAAAATAGATTGGATCAAGAACATTGTAGAGCATGCTAAAGGCATAACAAAATATATCTAGAATCACTCATGGATTTTGAACCTAATGAGGAAACACACAGGGGACAGGGATATTGTTAGGCCTGCCATCACTAGATTTGCAACTCATTTTTCAACATTGCAATCTATGCTTTCCCGACATAGAAACTTGCAAAGGG

Ace file of the UniGene sp_v3.0_unigene194258

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF659 domain containing protein	-	-	3.0e-18	63%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	60%

Source	Gene names
Sma3	GSVIVT00022003001; GSVIVT00027125001; GSVIVT00031937001; GSVIVT00033935001; Os09g0499600; OsI_31912; OsJ_29897; POPTRDRAFT_559231; RCOM_1777350; VITISV_006607; VITISV_022977; VITISV_028004;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3		IPR011523	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G22220.1	hAT transposon superfamily chr3:7839808-7842358 REVERSE LENGTH=761	7.0e-23	51%
RefSeq	Arabidopsis thaliana	NP_188861.2	hAT dimerization domain-containing protein [Arabidopsis thaliana]	9.0e-23	51%
RefSeq	Populus trichocarpa	XP_002307433.1	predicted protein [Populus trichocarpa]	7.0e-26	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5BED6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 421 aas, your sequence is shorter than subject: 142 - 896

Fln protein: L*WTVWRG*KALNKFR*GLFSQ*RSLLEEKKRSLVVNNIFRPLCEVFVGKM*EERHKTFFWTPCVAHCIDLMLEDIGKIDWIKNIVEHAKGITKYI*NHSWILNLMRKHTGDRDIVRPAITRFATHFSTLQSMLSRHRNLQR

Protein Length: 143

Fln nts: TTGTAGTGGACTGTTTGGAGGGGCTGAAAGGCCTTAAACAAGTTCAGATGAGGATTATTTAGCCAATGAAGAAGTCTCCTTGAAGAAAAGAAAAGGTCCTTAGTTGTGAACAATATTTTTAGGCCTCTTTGTGAGGTTTTTGTTGGTAAAATGTGAGAGGAAAGGCACAAAACCTTCTTTTGGACCCCATGTGTTGCACATTGCATAGACCTCATGCTTGAGGATATTGGTAAAATAGATTGGATCAAGAACATTGTAGAGCATGCTAAAGGCATAACAAAATATATCTAGAATCACTCATGGATTTTGAACCTAATGAGGAAACACACAGGGGACAGGGATATTGTTAGGCCTGCCATCACTAGATTTGCAACTCATTTTTCAACATTGCAATCTATGCTTTCCCGACATAGAAACTTGCAAAGGG

Fln Alignment:

AllPine_b_c33002___GKM*EERHKTFFWTPCVAHCIDLMLEDIGKIDWIKNIVEHAKGITKYI*NHSWILNLMRKHTGDRDIVRPAITRFATHFSTLQSMLS
A5BED6________________GKLLMXRYKTFFWSACGAHCIDLMLEEIGKRDEVKELLAKAKRITQFIYNNTWVLNLTRKRTGGRDIVQLAITRFASNFLTLQSIVS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain