SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene193318

Length: 576 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene193318
TGTACTGCATCTGGTGCTGACTTCTACACCATCAACCCCAAAGGCAATGTGCCAACATTGGTGCTGGATGATGGCACTGTTTTGAATGAGAACTCTGCCATTCTGCAATACATTGCTGATCAGGCTCCTGGCACTGTCGCACCTGTGAATGGTACTGTGGCTAGAGCAGTGCTGCAGAATGTGTTGAGCTATGTGTCTTCTGAGGTGCATCCTTCCATTGGAGGTCTGTTCAATCCCACTATCGGAGAGGAGACCAAGACCTTCATTCGAGGCAATGCCGCCAAGAAGCTCACCTACCTCGAGAACACTCTCATCGCTGACAAGTCGTTCTTGGTGGGTGACTCATTCACCATTGCTGACAGCTATCTGTACATTGTGTTGAGCTGGACCAACTATGTGGGCATTGACTTGTCTCCCTATCCCAGAGTGCAGGCCTATGCTGCTAGGATCGGTGCATTGGAGAATGTGAAGGCAGCACATGCAAGAATCGCCACTAGTCCATCCACAACCATATAAGCAGTGCGCCTATTAATTTTTGATCTGGTGCATTTCTGTAAGATCTAACTCTGAATCTTT

Ace file of the UniGene sp_v3.0_unigene193318 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glutathione-s-transferase (Fragment) n=1 Tax=Polymyxa betae RepID=Q9N9H7_9EUKA	-	-	6.0e-37	51%
FL-Next	tr=Glutathione S-transferase zeta class; Pinus brutia.	-	-	0.0	26%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D2XZY3

Fln msg: your sequence is shorter than subject: 172 - 226

Fln protein: CTASGADFYTINPKGNVPTLVLDDGTVLNENSAILQYIADQAPGTVAPVNGTVARAVLQNVLSYVSSEVHPSIGGLFNPTIGEETKTFIRGNAAKKLTYLENTLIADKSFLVGDSFTIADSYLYIVLSWTNYVGIDLSPYPRVQAYAARIGALENVKAAHARIATSPSTTI*

Protein Length: 173

Fln nts: TGTACTGCATCTGGTGCTGACTTCTACACCATCAACCCCAAAGGCAATGTGCCAACATTGGTGCTGGATGATGGCACTGTTTTGAATGAGAACTCTGCCATTCTGCAATACATTGCTGATCAGGCTCCTGGCACTGTCGCACCTGTGAATGGTACTGTGGCTAGAGCAGTGCTGCAGAATGTGTTGAGCTATGTGTCTTCTGAGGTGCATCCTTCCATTGGAGGTCTGTTCAATCCCACTATCGGAGAGGAGACCAAGACCTTCATTCGAGGCAATGCCGCCAAGAAGCTCACCTACCTCGAGAACACTCTCATCGCTGACAAGTCGTTCTTGGTGGGTGACTCATTCACCATTGCTGACAGCTATCTGTACATTGTGTTGAGCTGGACCAACTATGTGGGCATTGACTTGTCTCCCTATCCCAGAGTGCAGGCCTATGCTGCTAGGATCGGTGCATTGGAGAATGTGAAGGCAGCACATGCAAGAATCGCCACTAGTCCATCCACAACCATATAA___GCAGTGCGCCTATTAATTTTTGATCTGGTGCATTTCTGTAAGATCTAACTCTGAATCTTT

Fln Alignment:

AllPine_b_c31534___DFYTINPKGNVPTLVLDDGTVLNENSAILQYIADQAPGTVAPVNGTVARAVLQNVLSYVSSEVHP----SIGGLFNPTIG-EETKTFIRGNAAKKLTYLENTL--IADKSFLVGDSFTIADSYLYIVLSWTNYVGIDLSPYPRVQAYAARIGALENVKAA
D2XZY3________________EFTKLNPTHFVPTLV-DGDIIVADSFAILSYLEDKFPGHPLLPDDLQSKAISLQAAVLIGSNIQPLQNISVLNLIQEKLGPKEHQAWPKHFIEKGFTALEKLLKDVAGK-YSIGDKLTLADIFLVPQVYNARSYNVDMSKFPTLNRIDQALAELPEFQAA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain