SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene193143

Length: 487 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene193143
GGAAGAGATGTCCGCTGTTATGAATTCTCTCGGACTCAATCCAACCATGTCTGAGATTGAAGACATGATCAACGAAGTAGATCTTGATCAAACTGGCACTGTCGATTTGGAAGAATTCATCAAGATGATGAGCATCAAGACCAAGCCAGCGAACGCCGATGATGAGATGCGTAGCGCCTTCAATGTCTTCGACAAGGACGGCAGTGGAACTATCTCTGTCGATGAGCTCGGCCAGCTGATGAAGACCTTTGGAGAAAACCTCTCTGATGAGGATCTCAAGATCATGATTCAGGAGGTTGATAAGAACGGCGATGGTCATATTGACTATCAGGAATTTGTCAATTTCTTCTTGGAGAAGTGATTATGGGTTCTTTGGCAGTGGCACGAAATATATATCTACAGACGAGCGAGGCTCTGTAACGGTCATGACTATCTCTATGAATACAAAATACCCATTTGATCAGCCCGATCTGCAACGGTAAAAAAG

Ace file of the UniGene sp_v3.0_unigene193143 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calmodulin n=2 Tax=Sclerotiniaceae RepID=A6RWC9_BOTFB	-	-	2.0e-35	62%
FL-Next	sp=Calmodulin; Pythium splendens (Leaf rot fungus).	-	-	0.0	50%
Sma3	Calmodulin	-	-	1.734e-17	-

Source	Gene names
Sma3	At2g27030; At2g41110; At3g43810; At3g56800; At5g21274; CAL1; CALM1; CAM; CAM-1; CAM-11; CAM-16; CAM-2; CAM1; CAM1-1; CAM1-2; CAM1-3; CAM2; CAM3; CAM5; CAM53; CAM6; CAM7; CAM72; CAM81; CAMF-1; CAMF1; CCM1; CHLREDRAFT_188144; CMD1; CaM; CaM-3; CaM1; CaM2; C

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	O-methyltransferase activity	GO:0008171	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	O-methyltransferase, family 3	IPR002935	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G21274.1	CAM6, ACAM-6 calmodulin 6 chr5:7214740-7215950 REVERSE LENGTH=149	4.0e-36	49%
RefSeq	Arabidopsis thaliana	NP_176814.1	calmodulin 4 [Arabidopsis thaliana]	5.0e-36	48%
RefSeq	Populus trichocarpa	XP_002329709.1	predicted protein [Populus trichocarpa]	3.0e-37	49%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q71UH5

Fln msg: atg_distance in limit (1-15): atg_distance = 12, your sequence is shorter than subject: 118 - 149

Fln protein: MSAVMNSLGLNPTMSEIEDMINEVDLDQTGTVDLEEFIKMMSIKTKPANADDEMRSAFNVFDKDGSGTISVDELGQLMKTFGENLSDEDLKIMIQEVDKNGDGHIDYQEFVNFFLEK*

Protein Length: 119

Fln nts: GGAAGAG_-_ATGTCCGCTGTTATGAATTCTCTCGGACTCAATCCAACCATGTCTGAGATTGAAGACATGATCAACGAAGTAGATCTTGATCAAACTGGCACTGTCGATTTGGAAGAATTCATCAAGATGATGAGCATCAAGACCAAGCCAGCGAACGCCGATGATGAGATGCGTAGCGCCTTCAATGTCTTCGACAAGGACGGCAGTGGAACTATCTCTGTCGATGAGCTCGGCCAGCTGATGAAGACCTTTGGAGAAAACCTCTCTGATGAGGATCTCAAGATCATGATTCAGGAGGTTGATAAGAACGGCGATGGTCATATTGACTATCAGGAATTTGTCAATTTCTTCTTGGAGAAGTGA___TTATGGGTTCTTTGGCAGTGGCACGAAATATATATCTACAGACGAGCGAGGCTCTGTAACGGTCATGACTATCTCTATGAATACAAAATACCCATTTGATCAGCCCGATCTGCAACGGTAAAAAAG

Fln Alignment:

AllPine_b_c31344___EEMSAVMNSLGLNPTMSEIEDMINEVDLDQTGTVDLEEFIKMMSIKTKPANADDEMRSAFNVFDKDGSGTISVDELGQLMKTFGENLSDEDLKIMIQEVDKNGDGHIDYQEFVNFFLEK
Q71UH5________________KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain