SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene192832

Length: 513 nt

UniGene Fasta

>sp_v3.0_unigene192832
ACTTTGGCGTTGGCGCTGGCTTTTATGTGGACGCCACGACCGATAAGTGGAAGACCAATTGGCGCATGTACTCTTACGTAAACGACGAATTGCATAAAGTGATTCACAAGAACTTCAACAATGGCGAAGAGAAGCTCAATATTGGCATTTTTGGACACAGTATGGGTGGTCACGGAGCTCTCATTTCCTTTTTGAAGAATCCGGGCAAGTACAAGTCAGTGTCGGCTTTTGCGCCCATTTCGAACCCAATGGAGTGCGACTGGGGCAAGAACGCCTTCACGGGCTACTTGGGCGAGGACAAGGAGACCTGGAAACACTATGACGCTTCATACTTGGTCACGAATTGGTCATCGGAGCCATGCAGCATTCTGATTGATCAAGGCAAGGACGACGAGTTCCTCAAGAAGGGCCAGCTCTTGCCCGAGAACTTTCAGAAGGCCATCATTGACAACAACAAGGACGTCAATCTTGTGCTGAGATTCCAAGAAGGCTATGATCATTCCTATTACTTCA

Ace file of the UniGene sp_v3.0_unigene192832

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: s-formylglutathione hydrolase-like n=3 Tax=Amniota RepID=UPI0000F2CF5D	-	-	0.0	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Sma3	Esterase D	-	-	3.176e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Carboxylesterase.	EC:3.1.1.1	-	4.226e-06	-

Source	KEGGs	Term	e value	Identity
Sma3	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	4.226e-06	%
Sma3	Drug metabolism - other enzymes	00983	4.226e-06	%
Sma3	Metabolic pathways	01100	4.226e-06	%
Sma3	Biosynthesis of secondary metabolites	01110	4.226e-06	%

Source	Gene names
Sma3	At2g41530; B1150F11.18-1; CHLREDRAFT_175746; GSVIVT00025648001; MICPUCDRAFT_56831; MICPUCDRAFT_58498; MICPUN_56654; OSTLU_43004; OSTLU_43308; Os01g0939700; OsI_05135; OsJ_04718; Ot15g01350; PHATRDRAFT_17427; PHYPADRAFT_126818; POPTRDRAFT_652670; RCOM_0893

Source	GOs	Term	Type	Identity
Sma3	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	carboxylesterase activity	GO:0004091	Molecular Function	-
Sma3	S-formylglutathione hydrolase activity	GO:0018738	Molecular Function	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Putative esterase	IPR000801	-	-
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	Alcohol dehydrogenase GroES-like	IPR013154	-	-
Sma3	Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase	IPR014183	-	-
Sma3	S-formylglutathione hydrolase	IPR014186	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G41530.1	ATSFGH, SFGH S-formylglutathione hydrolase chr2:17323656-17325430 REVERSE LENGTH=284	54%
RefSeq	Arabidopsis thaliana	NP_181684.1	S-formylglutathione hydrolase [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002308013.1	esterase d, s-formylglutathione hydrolase [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NNG6

Fln msg: Distance to subject end: 19 aas, your sequence is shorter than subject: 170 - 283

Fln protein: FGVGAGFYVDATTDKWKTNWRMYSYVNDELHKVIHKNFNNGEEKLNIGIFGHSMGGHGALISFLKNPGKYKSVSAFAPISNPMECDWGKNAFTGYLGEDKETWKHYDASYLVTNWSSEPCSILIDQGKDDEFLKKGQLLPENFQKAIIDNNKDVNLVLRFQEGYDHSYYF

Protein Length: 171

Fln nts: ACTTTGGCGTTGGCGCTGGCTTTTATGTGGACGCCACGACCGATAAGTGGAAGACCAATTGGCGCATGTACTCTTACGTAAACGACGAATTGCATAAAGTGATTCACAAGAACTTCAACAATGGCGAAGAGAAGCTCAATATTGGCATTTTTGGACACAGTATGGGTGGTCACGGAGCTCTCATTTCCTTTTTGAAGAATCCGGGCAAGTACAAGTCAGTGTCGGCTTTTGCGCCCATTTCGAACCCAATGGAGTGCGACTGGGGCAAGAACGCCTTCACGGGCTACTTGGGCGAGGACAAGGAGACCTGGAAACACTATGACGCTTCATACTTGGTCACGAATTGGTCATCGGAGCCATGCAGCATTCTGATTGATCAAGGCAAGGACGACGAGTTCCTCAAGAAGGGCCAGCTCTTGCCCGAGAACTTTCAGAAGGCCATCATTGACAACAACAAGGACGTCAATCTTGTGCTGAGATTCCAAGAAGGCTATGATCATTCCTATTACTTCA

Fln Alignment:

AllPine_b_c31003___FGVGAGFYVDATTDKWKTNWRMYSYVNDELHKVIHKNFNNGEEKLNIGIFGHSMGGHGALISFLKNPGKYKSVSAFAPISNPMECDWGKNAFTGYLGEDKETWKHYDASYLVTNWSSEPCSILIDQGKDDEFLKKGQLLPENFQKAIIDNNKDVNLVLRFQEGYDHSYYF
A9NNG6________________FGVGAGFYLNATQGKW-ANWRMYDYVVDELPKLLSSHFHQ-LDTANASIFGHSMGGHGALTVFFKNQNKYKSVSAFAPIVNPIDCPWGQKAFLNYLGDNKSSWEEYDATYLVKKCNGLSKTILIDQGEEDKFL-HNQLLPHKFEEACKIAN--VPLTLRLQPGYDHSFFF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain