SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene192771

Length: 481 nt

UniGene Fasta

>sp_v3.0_unigene192771
CGAGTACCTCATGAAGTGCTTCCCCGAGAACAAGGAGGTCGAGAGGATGCGCGCCGCCATGGGCAAGTTCGGCCTCACCGGCAAGACCCAGATCACCCCCATGCGGGTCCTCTCCGACGGCCTCAAGAGCCGCGTCGTGTTCGCCTGGCTGGCCTGGCAGGAGCCCCACCTCCTGCTCCTCGACGAGCCCACCAACCACTTGGACATCGAGACCATCGACTCGCTCGCCGAGACCATCAACAACTGGGACGGCGGCATGGTCCTCGTCTCCCACGACTTCCGGCTCATCGAGCAGGTGGCCAAGGAGATCTGGATCTGCGAGAACCAGACCGTCTCCCCGTGGAAGGGCTCCATCCGAGCCTACAAGAAGCACCTCAAGGCCAAGATGGACGAGGAGGCAGCACGCAACAAGTAGAGAGACCTACTTCACGTGTAGCACACCACGCCGGCAAGAGATCGTCATCATCGTCTTTCCGACACC

Ace file of the UniGene sp_v3.0_unigene192771

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-binding cassette, sub-family F, member 2-like [Danio rerio]	-	-	0.0	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Sma3	ATP-binding cassette superfamily	-	-	1.732e-09	-

Source	Gene names
Sma3	ABCT1; AT5G60790; At5g60790; B1130E07.4; B1331F11.24; CHLREDRAFT_132213; FAP151; Fru5_1; GSVIVT00002278001; GSVIVT00002281001; GSVIVT00022186001; MICPUCDRAFT_44200; MICPUCDRAFT_68853; MICPUCDRAFT_70921; MICPUN_55988; MICPUN_58625; MICPUN_83355; MICPUN_981

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	flagellum	GO:0019861	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Thiosulphate sulfurtransferase, conserved site	IPR001307	-	-
Sma3	Plant regulator RWP-RK	IPR003035	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3		IPR014778	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Myb-like domain	IPR017877	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G60790.1	ATGCN1, GCN1 ABC transporter family protein chr5:24453760-24455767 REVERSE LENGTH=595	67%
RefSeq	Arabidopsis thaliana	NP_200887.1	ABC transporter F family member 1 [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002331473.1	ABC transporter family protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVC5

Fln msg: your sequence is shorter than subject: 138 - 599

Fln protein: EYLMKCFPENKEVERMRAAMGKFGLTGKTQITPMRVLSDGLKSRVVFAWLAWQEPHLLLLDEPTNHLDIETIDSLAETINNWDGGMVLVSHDFRLIEQVAKEIWICENQTVSPWKGSIRAYKKHLKAKMDEEAARNK*

Protein Length: 139

Fln nts: CGAGTACCTCATGAAGTGCTTCCCCGAGAACAAGGAGGTCGAGAGGATGCGCGCCGCCATGGGCAAGTTCGGCCTCACCGGCAAGACCCAGATCACCCCCATGCGGGTCCTCTCCGACGGCCTCAAGAGCCGCGTCGTGTTCGCCTGGCTGGCCTGGCAGGAGCCCCACCTCCTGCTCCTCGACGAGCCCACCAACCACTTGGACATCGAGACCATCGACTCGCTCGCCGAGACCATCAACAACTGGGACGGCGGCATGGTCCTCGTCTCCCACGACTTCCGGCTCATCGAGCAGGTGGCCAAGGAGATCTGGATCTGCGAGAACCAGACCGTCTCCCCGTGGAAGGGCTCCATCCGAGCCTACAAGAAGCACCTCAAGGCCAAGATGGACGAGGAGGCAGCACGCAACAAGTAG___AGAGACCTACTTCACGTGTAGCACACCACGCCGGCAAGAGATCGTCATCATCGTCTTTCCGACACC

Fln Alignment:

AllPine_b_c30938___EYLMKCFPENKEVERMRAAMGKFGLTGKTQITPMRVLSDGLKSRVVFAWLAWQEPHLLLLDEPTNHLDIETIDSLAETINNWDGGMVLVSHDFRLIEQVAKEIWICENQTVSPWKGSIRAYKKHLKAK
A9NVC5________________QYMMNEYPGIEE-EKMRAAIGKFGLTGKAQIMPMENLSDGQRSRVIFAWLAWRLPHLLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAKEIWVCENKRVTRWGGDIMDFKRHLKSK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain