SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene192655

Length: 430 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene192655
ATGTTGGCAGAGGATGAACTGCGTGATGCCGTGCTGCTGGTGTTCGCCAACAAACAGGATCTGCCGAATGCCATGAAAGTGCAGGAAGTGACTGAGCGTTTGGGTCTGAACAAATTGCGCAATCGCCAGTGGTACATTCAGGGCACATCGGCACCGACCGGTGATGGGCTGTACGAGGGACTCGACTGGCTGTCGGCCACACTGGGCAAAAAGGCGTCGTCAAAGTAAACGCACACACAACGCCACGCCAACTGCCGCTGTCAGTGACAGACAGACATACGGAGGTGTTCGGCCGCGCAACCACGCACTGCGGCGACGATGTGGCCGGCCAACGGATCGCGCAATTGCAAGGCTTTCGCTTTTCTGCTCTCATTCGTCGTTTACGTTGTGAGTCGTCGAATGGACTGCGTGTAAAACGGACGATCACTGC

Ace file of the UniGene sp_v3.0_unigene192655 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ADP-ribosylation factor n=1 Tax=Karlodinium micrum RepID=A7YXV3_KARMI	-	-	5.0e-24	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Sma3	ADP-ribosylation factor	-	-	8.791e-19	-

Source	Gene names
Sma3	ARF; ARF1; ARF2-A; ARF2-B; ARF3; ARFA1-A; ARFA1-D; ARFA1A; ARFA1B; ARFA2-A; ARFA2-B; ARL1; AT3G62290; Arf; Arf1; ArfA11; ArfA12; ArfA13; ArfA14; ArfA15; ArfB1B1; ArfB1B2; ArfB21; ArfB22; ArfB23; Arl1A1; Arl1A2; At1g10630; At1g23490; At1g70490; At2g15310;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	endosome	GO:0005768	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	Golgi stack	GO:0005795	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	signal transducer activity	GO:0004871	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	small GTPase mediated signal transduction	GO:0007264	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	PAS	IPR000014	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3		IPR006688	-	-
Sma3	Small GTPase superfamily, ARF/SAR type	IPR006689	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G62290.1	ATARFA1E, ARFA1E ADP-ribosylation factor A1E chr3:23052287-23053545 FORWARD LENGTH=181	1.0e-29	70%
RefSeq	Arabidopsis thaliana	NP_001190162.1	ADP-ribosylation factor A1E [Arabidopsis thaliana]	1.0e-29	70%
RefSeq	Populus trichocarpa	XP_002312302.1	predicted protein [Populus trichocarpa]	1.0e-29	70%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PPL2

Fln msg: your sequence is shorter than subject: 76 - 181

Fln protein: MLAEDELRDAVLLVFANKQDLPNAMKVQEVTERLGLNKLRNRQWYIQGTSAPTGDGLYEGLDWLSATLGKKASSK*

Protein Length: 77

Fln nts: ATGTTGGCAGAGGATGAACTGCGTGATGCCGTGCTGCTGGTGTTCGCCAACAAACAGGATCTGCCGAATGCCATGAAAGTGCAGGAAGTGACTGAGCGTTTGGGTCTGAACAAATTGCGCAATCGCCAGTGGTACATTCAGGGCACATCGGCACCGACCGGTGATGGGCTGTACGAGGGACTCGACTGGCTGTCGGCCACACTGGGCAAAAAGGCGTCGTCAAAGTAA___ACGCACACACAACGCCACGCCAACTGCCGCTGTCAGTGACAGACAGACATACGGAGGTGTTCGGCCGCGCAACCACGCACTGCGGCGACGATGTGGCCGGCCAACGGATCGCGCAATTGCAAGGCTTTCGCTTTTCTGCTCTCATTCGTCGTTTACGTTGTGAGTCGTCGAATGGACTGCGTGTAAAACGGACGATCACTGC

Fln Alignment:

AllPine_b_c30817___MLAEDELRDAVLLVFANKQDLPNAMKVQEVTERLGLNKLRNRQWYIQGTSAPTGDGLYEGLDWLSATLGKKA
C0PPL2________________MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain