SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene192588

Length: 459 nt

UniGene Fasta

>sp_v3.0_unigene192588
CAATATGAATTTGGTTATGAAGTTCCTGTTCAGTACCTAGCGAAGCGTGTTGCCGATGTTTCTCAGATTTACACACAACATGCTTACATGCGCCCTCTTGGTGTTGCTATGATCTTGATTGGAATTGATGAGGAAACGGGTCCTCAACTCTACAAATGCGATCCTGCTGGAACTTACATGGGTTTCAAGGCCACCGCTGCTGGAACAAAAGAACAGGAAGCTTACAACTTTTTGGAGAAGAAGATGAAAACCAATCCCGAACTTTCTAGGAACGAAACAATTCAGCTTGCTATCACAACTCTACAAACAATCCTTTCGGTCGATTTCAAGCCCACAGAGCTTGAAGTTGGAGTGGTTAGCGTGGAGAATCCCCTCTTTGTTCAATTGACTCCAGAACAAATCGAAGAACACCTCACTGCCATTTCTGAACGCGATTAATCGACAAGGAAATGAACTTCG

Ace file of the UniGene sp_v3.0_unigene192588

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Proteasome subunit alpha type n=3 Tax=Physcomitrella patens subsp. patens RepID=A9SPF1_PHYPA	-	-	0.0	63%
FL-Next	sp=Proteasome subunit alpha type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Sma3	Proteasome subunit alpha type	-	-	2.22806e-43	-

Source	ECs	Term	Type	e value	Identity
Sma3	Proteasome endopeptidase complex.	EC:3.4.25.1	-	0.0	-

Source	Gene names
Sma3	At2g05840; At5g35590; CHLREDRAFT_128384; GSVIVT00034058001; K2K18.4; LOC_Os03g08280; MICPUCDRAFT_49613; MICPUN_107861; OSJNBa0050H14.19; OSJNBb0076N15.5; OSTLU_41449; Os03g0180400; OsI_10259; Ot06g00420; PAA1; PAA2; PHATRDRAFT_53939; PHYPADRAFT_194639; PH

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	proteasome core complex	GO:0005839	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	threonine-type endopeptidase activity	GO:0004298	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Proteasome, alpha-subunit, N-terminal domain	IPR000426	-	-
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G35590.1	PAA1 proteasome alpha subunit A1 chr5:13765417-13767768 REVERSE LENGTH=246	66%
RefSeq	Arabidopsis thaliana	NP_198409.1	proteasome subunit alpha type-6-A [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002308263.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NP38

Fln msg: your sequence is shorter than subject: 146 - 246

Fln protein: QYEFGYEVPVQYLAKRVADVSQIYTQHAYMRPLGVAMILIGIDEETGPQLYKCDPAGTYMGFKATAAGTKEQEAYNFLEKKMKTNPELSRNETIQLAITTLQTILSVDFKPTELEVGVVSVENPLFVQLTPEQIEEHLTAISERD*

Protein Length: 147

Fln nts: CAATATGAATTTGGTTATGAAGTTCCTGTTCAGTACCTAGCGAAGCGTGTTGCCGATGTTTCTCAGATTTACACACAACATGCTTACATGCGCCCTCTTGGTGTTGCTATGATCTTGATTGGAATTGATGAGGAAACGGGTCCTCAACTCTACAAATGCGATCCTGCTGGAACTTACATGGGTTTCAAGGCCACCGCTGCTGGAACAAAAGAACAGGAAGCTTACAACTTTTTGGAGAAGAAGATGAAAACCAATCCCGAACTTTCTAGGAACGAAACAATTCAGCTTGCTATCACAACTCTACAAACAATCCTTTCGGTCGATTTCAAGCCCACAGAGCTTGAAGTTGGAGTGGTTAGCGTGGAGAATCCCCTCTTTGTTCAATTGACTCCAGAACAAATCGAAGAACACCTCACTGCCATTTCTGAACGCGATTAA___TCGACAAGGAAATGAACTTCG

Fln Alignment:

AllPine_b_c30747___QYEFGYEVPVQYLAKRVADVSQIYTQHAYMRPLGVAMILIGIDEETGPQLYKCDPAGTYMGFKATAAGTKEQEAYNFLEKKMKTNPELSRNEXXXXXXXXXXXXXSVDFKPTELEVGVVSVENPLFVQLTPEQIEEHLTAISERD
A9NP38________________RFKWGYEMPVDVLARRLADKSQVYTQHAYMRPLGVAAIVLGIDEESGPQLFKCDPAGHFVGYKATAAGVKESEAVSFLEKKLKNNPELSYEETVQTAVSALQSVLQEDFKATEIEVGVVTKDSPVFRTLSTDEIDEHLTAISERD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain