SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene192558

Length: 306 nt

UniGene Fasta

>sp_v3.0_unigene192558
TTTTGTTGATCTAGTCGGTACAAGTTTTGAAGAGAATCACGTCGCTACTGGATTTGGTGCCCATCTTGCGATTCCACTCTTGCGTAAGGCATGGAGACCCGATCTCACAAAAGACGAAGCCAAGAAACTTCTCGATGACTGTCTGCGAGTGTTGTTCTATCGTGACGCTCGTGCTTTGAACAGATTCAAATAGCAACAGCTACTGTGGCGGGACTTGAGATTTCTGAACCTTACACACTCGAAACCTACTGGAACTATGGAACTGGACCCGATCAACACATTGAACAATGAAGAAATGGGAAGTAC

Ace file of the UniGene sp_v3.0_unigene192558

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Proteasome subunit beta type n=1 Tax=Ectocarpus siliculosus RepID=D8LRR1_ECTSI	-	-	3.0e-20	66%
FL-Next	sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%

Source	Gene names
Sma3	Os09g0515200; OsI_32035; OsJ_30005; OsPBG1; P0450E05.24;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	proteasome core complex	GO:0005839	Cellular Component	-
Sma3	threonine-type endopeptidase activity	GO:0004298	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3	Proteasome, beta-type subunit, conserved site	IPR016050	-	-
Sma3	Proteasome endopeptidase complex, beta subunit	IPR016295	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G56450.1	PBG1 20S proteasome beta subunit G1 chr1:21141970-21144186 FORWARD LENGTH=246	1.0e-19	53%
RefSeq	Arabidopsis thaliana	NP_176040.1	proteasome subunit beta type-4 [Arabidopsis thaliana]	1.0e-19	53%
RefSeq	Populus trichocarpa	XP_002308619.1	predicted protein [Populus trichocarpa]	1.0e-19	54%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PPW1

Fln msg: Overlapping hits, possible frame ERROR between 190 and 181, your sequence is shorter than subject: 97 - 262

Fln protein: FVDLVGTSFEENHVATGFGAHLAIPLLRKAWRPDLTKDEAKKLLDDCLRVLFYRDARALxxxxxATATVAGLEISEPYTLETYWNYGTGPDQHIEQ*

Protein Length: 98

Fln nts: TTTTGTTGATCTAGTCGGTACAAGTTTTGAAGAGAATCACGTCGCTACTGGATTTGGTGCCCATCTTGCGATTCCACTCTTGCGTAAGGCATGGAGACCCGATCTCACAAAAGACGAAGCCAAGAAACTTCTCGATGACTGTCTGCGAGTGTTGTTCTATCGTGACGCTCGTGCTTTGxxxxxxxxxxxxxxxGCAACAGCTACTGTGGCGGGACTTGAGATTTCTGAACCTTACACACTCGAAACCTACTGGAACTATGGAACTGGACCCGATCAACACATTGAACAATGAAGAAATGGGAAGTAC

Fln Alignment:

AllPine_b_c30714___VDLVGTSFEENHVATGFGAHLAIPLLRKAWRPDLTKDEAKKLLDDCLRVLFYRDARALNxxxIATATVAGLEISEPYTLETYW
C0PPW1________________VNMIGVHYEENHVATGFGNHLARPIFRDEWHEDMTFEEGVKLLEKCMLVLLYRDRSAVNxxxIAKITEEGATISEPYAIKTHW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain