SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene192520

Length: 505 nt

UniGene Fasta

>sp_v3.0_unigene192520
CTGCTGAGTTCAAGCACATTCAACGTATTTTAAACACAAACGTTGAGGGAAAGAGAAAGGTCCCATATGCTATCAGAGTCATCAGAGGTATTGGCAGAAGATTCGCTTTCGTTCTCTGCAAAAAGGCAAAAATCAATGTTAACAGAAGAGCTGGTGAATTGAACGAAGATGAAGTCAACACTCTTACCAACATCCTTGCTGACCCAGTCGGAAACGGTATCCCAGCTTGGTTCTTGAACAGACAAAGAGATTTCAAGGATGGTACCACCAGTCAACTTGCTTCTAACGCTCTCGATACTAAGCTCAGAGAGGATCTTGAAAGAATGAAGAAAATCAGATGCCACAGAGGTCTTAGACACTTCTGGGGTCTTAAAGTCAGAGGTCAACACACCAAATCCACTGGTAGAGGTGGTGCTTCAGTCGGTGTCACCAAGAAGAAGAAATAGAGAAACTAATAAAAATACAGCGAGCACAGAAGAACAAATGCTCTCGGAATGGGAATTGG

Ace file of the UniGene sp_v3.0_unigene192520

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein Y57G11C.16, confirmed by transcript evidence n=3 Tax=Caenorhabditis RepID=O18240_CAEEL	-	-	0.0	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Sma3	40S ribosomal protein S18	-	-	7.209e-12	-

Source	Gene names
Sma3	CHLREDRAFT_155649; GSVIVT00019990001; GSVIVT00023737001; GSVIVT00031714001; LOC_Os03g58050; MICPUCDRAFT_49747; MICPUN_109369; OJ1656_E11.104; OJ1656_E11.108; OJ1656_E11.114; OSJNBb0021G19.20; OSJNBb0060J21.1; OSTLU_29591; Os03g0794700; Os07g0173500; Os07g

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	rRNA binding	GO:0019843	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S13	IPR001892	-	0.0	-
Sma3	Ribosomal protein S13, conserved site	IPR018269	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G09800.1	RPS18C S18 ribosomal protein chr4:6173818-6174963 FORWARD LENGTH=152	62%
RefSeq	Arabidopsis thaliana	NP_564434.1	40S ribosomal protein S18 [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002302108.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5AD18

Fln msg: atg_distance in limit (1-15): atg_distance = 7, W2: There is no M at the beginning,

Fln protein: AEFKHIQRILNTNVEGKRKVPYAIRVIRGIGRRFAFVLCKKAKINVNRRAGELNEDEVNTLTNILADPVGNGIPAWFLNRQRDFKDGTTSQLASNALDTKLREDLERMKKIRCHRGLRHFWGLKVRGQHTKSTGRGGASVGVTKKKK*

Protein Length: 149

Fln nts: CTGCTGAGTTCAAGCACATTCAACGTATTTTAAACACAAACGTTGAGGGAAAGAGAAAGGTCCCATATGCTATCAGAGTCATCAGAGGTATTGGCAGAAGATTCGCTTTCGTTCTCTGCAAAAAGGCAAAAATCAATGTTAACAGAAGAGCTGGTGAATTGAACGAAGATGAAGTCAACACTCTTACCAACATCCTTGCTGACCCAGTCGGAAACGGTATCCCAGCTTGGTTCTTGAACAGACAAAGAGATTTCAAGGATGGTACCACCAGTCAACTTGCTTCTAACGCTCTCGATACTAAGCTCAGAGAGGATCTTGAAAGAATGAAGAAAATCAGATGCCACAGAGGTCTTAGACACTTCTGGGGTCTTAAAGTCAGAGGTCAACACACCAAATCCACTGGTAGAGGTGGTGCTTCAGTCGGTGTCACCAAGAAGAAGAAATAG___AGAAACTAATAAAAATACAGCGAGCACAGAAGAACAAATGCTCTCGGAATGGGAATTGG

Fln Alignment:

AllPine_b_c30674___EFKHIQRILNTNVEGKRKVPYAIRVIRGIGRRFAFVLCKKAKINVNRRAGELNEDEVNTLTNILADPVGNGIPAWFLNRQRDFKDGTTSQLASNALDTKLREDLERMKKIRCHRGLRHFWGLKVRGQHTKSTGRGGASVGVTKKK
D5AD18________________EFQHILRVLNTNVDGRQKIMFALTSIKGIGRRFANLVCKKADVDMNKRAGELSAAELENLMTIVSNPKQFKIPEWFLNRQKDYKDGRTNQLVSNALDMRLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain