SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene192323

Length: 471 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene192323
TACCGCTGGTCAGGAGAGATTCCAGAGCTTGGGCGTTGCCTTCTACCGTGGCGCCGATGCGTGCGTGCTTGTCTTCGACGTCAATGTGGCCAAGACCTTCGAGAATCTTCACAGCTGGCGCGAGGAATTTTTGGTTCAGGCTGGTCCTCGCGATCCCGAGACCTTCCCCTTCATCGTGCTCGGTAACAAGATCGATTTGGAGAGCTCGCGGGTGGTGTCGCAGAAGCGTGCCCAGGCGTGGTGCCAGTCGAAGGGCAACATTCCCTACTTCGAGACTTCGGCCAAGGAGGCCATTAATGTCGAGCAGGCCTTCCAAACGATCGCCAGGAACGCCATGAAGGAGGAGGACGATGTCGATTTGTCCGGCATCGTCGACAACATCCATCTCGACAAGACCGAGCCTGCTCAGACGGGTTGTTCGTGCTAGATCTGTATATTTAAACTTCAACCCAAATACATTCCTCAAACGCC

Ace file of the UniGene sp_v3.0_unigene192323 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ras-related protein Rab-7A n=3 Tax=Dictyosteliida RepID=RAB7A_DICDI	-	-	0.0	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	Ras-related protein Rab7	-	-	1.295e-23	-

Source	Gene names
Sma3	AT4g09720; At1g22740; At1g49300; At1g52280; At2g21880; At3g16100; At3g18820; At4g09720; At5g39620; AtRAB71; AtRAB72; AtRAB73; AtRAB74; AtRAB76; AtRAB77; AtRAB78; B1130G10.11; B1131B07.11; CHLREDRAFT_195521; F13F21.26; F17A8.70; F19K6.10; GSVIVT00005411001

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	small GTPase mediated signal transduction	GO:0007264	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3		IPR013753	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G49300.1	ATRAB7, ATRABG3E, RABG3E RAB GTPase homolog G3E chr1:18234842-18236968 FORWARD LENGTH=206	63%
RefSeq	Arabidopsis thaliana	NP_175355.1	RAB GTPase homolog G3E [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002313053.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NR13

Fln msg: your sequence is shorter than subject: 142 - 206

Fln protein: TAGQERFQSLGVAFYRGADACVLVFDVNVAKTFENLHSWREEFLVQAGPRDPETFPFIVLGNKIDLESSRVVSQKRAQAWCQSKGNIPYFETSAKEAINVEQAFQTIARNAMKEEDDVDLSGIVDNIHLDKTEPAQTGCSC*

Protein Length: 143

Fln nts: TACCGCTGGTCAGGAGAGATTCCAGAGCTTGGGCGTTGCCTTCTACCGTGGCGCCGATGCGTGCGTGCTTGTCTTCGACGTCAATGTGGCCAAGACCTTCGAGAATCTTCACAGCTGGCGCGAGGAATTTTTGGTTCAGGCTGGTCCTCGCGATCCCGAGACCTTCCCCTTCATCGTGCTCGGTAACAAGATCGATTTGGAGAGCTCGCGGGTGGTGTCGCAGAAGCGTGCCCAGGCGTGGTGCCAGTCGAAGGGCAACATTCCCTACTTCGAGACTTCGGCCAAGGAGGCCATTAATGTCGAGCAGGCCTTCCAAACGATCGCCAGGAACGCCATGAAGGAGGAGGACGATGTCGATTTGTCCGGCATCGTCGACAACATCCATCTCGACAAGACCGAGCCTGCTCAGACGGGTTGTTCGTGCTAG___ATCTGTATATTTAAACTTCAACCCAAATACATTCCTCAAACGCC

Fln Alignment:

AllPine_b_c30453___TAGQERFQSLGVAFYRGADACVLVFDVNVAKTFENLHSWREEFLVQAGPRDPETFPFIVLGNKIDLE--SSRVVSQKRAQAWCQSKGNIPYFETSAKEAINVEQAFQTIARNAMKEEDDVDLSGIVDNIHLDKTEPAQT-GCSC
A9NR13________________TAGQERFQSLGVAFYRGADCCVLVYDVNVLKSFDNLNNWRDEFLIQASPSDPENFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGFNVEAAFQCIAKNALKNEPEEEIY-LPDTIDVNAGRPQRTSGCDC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain