SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene192159

Length: 531 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene192159
ACGATCGATGCAGCTGAGCTGAAGCAGGCGATGGCGTCACTCGGGTTTGACCGCAAAAACAAGTTGGCGCTCAGTCTGTTGGACAGCCTAAAAGACGGCGAAATAACGTTTCCCGAATTCGTTGATATGATGACAGCGCGTGTGAGTGACAGCGAAAATAAGGACGATATCGCGAAGGTATTTCGGCTGTTCGATGAGGAGGAAACGGGCAAAATCACGATCGACAACCTCCGTCGTGTGGCAAAGGAGTTGGGCGAACACGTGACGGACGACGAACTGAAGGAAATGATCGAACGCGGAGACATCAATAAGACCGGTAAAGTTGAATTGGACGACTTCGTGCAGATCATGACGCGCAAACAGTTCTAAACGCTCTCTACATGTAATGCACAGGCCGCTTCGTGCGGCCGTGCTCTGCGTGGCGTCGCGTCGGGTGAACGCTCTTCCGTCTGTTCCGATTTTCGTGTGCCGCCGCTCCGCTTTCAGATTCCTCCCTCTGCTGTTTGCTGCATAAATCATTAGGTTTGACTT

Ace file of the UniGene sp_v3.0_unigene192159 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	EF hand family protein [Tetrahymena thermophila] gb\|EAS06746.1\| EF hand family protein [Tetrahymena thermophila SB210]	-	-	6.0e-25	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	36%
Sma3	Centrin	-	-	2.353e-18	-

Source	Gene names
Sma3	CEN2; CHLREDRAFT_159554; MICPUCDRAFT_49514; MICPUN_90289; MvCen1; OSTLU_31762; Odcen; PHYPADRAFT_233973; PHYPADRAFT_87691; Slcen; THAPSDRAFT_33968; VFL2;

Source	GOs	Term	Type	Identity
Sma3	bacterial-type flagellum	GO:0009288	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	ciliary or flagellar motility	GO:0001539	Biological Process	-
Sma3	mitosis	GO:0007067	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNV3

Fln msg: your sequence is shorter than subject: 123 - 173

Fln protein: TIDAAELKQAMASLGFDRKNKLALSLLDSLKDGEITFPEFVDMMTARVSDSENKDDIAKVFRLFDEEETGKITIDNLRRVAKELGEHVTDDELKEMIERGDINKTGKVELDDFVQIMTRKQF*

Protein Length: 124

Fln nts: ACGATCGATGCAGCTGAGCTGAAGCAGGCGATGGCGTCACTCGGGTTTGACCGCAAAAACAAGTTGGCGCTCAGTCTGTTGGACAGCCTAAAAGACGGCGAAATAACGTTTCCCGAATTCGTTGATATGATGACAGCGCGTGTGAGTGACAGCGAAAATAAGGACGATATCGCGAAGGTATTTCGGCTGTTCGATGAGGAGGAAACGGGCAAAATCACGATCGACAACCTCCGTCGTGTGGCAAAGGAGTTGGGCGAACACGTGACGGACGACGAACTGAAGGAAATGATCGAACGCGGAGACATCAATAAGACCGGTAAAGTTGAATTGGACGACTTCGTGCAGATCATGACGCGCAAACAGTTCTAA___ACGCTCTCTACATGTAATGCACAGGCCGCTTCGTGCGGCCGTGCTCTGCGTGGCGTCGCGTCGGGTGAACGCTCTTCCGTCTGTTCCGATTTTCGTGTGCCGCCGCTCCGCTTTCAGATTCCTCCCTCTGCTGTTTGCTGCATAAATCATTAGGTTTGACTT

Fln Alignment:

AllPine_b_c30273___TIDAAELKQAMASLGFDRKNXXXXXXXXXXXD---GEITFPEFVDMMTARVSDSENKDDIAKVFRLFDEEETGKITIDNLRRVAKELGEHVTDDELKEMIERGDINKTGKVELDDFVQIMTR
B8LNV3________________TIDAKELNVAMRALGFEMTEEQIRQMIADVDKDGSGTIDFDEFAYMMTAKIGERDSREELTRAFREIDQDKNGKISAADIQRMARELGESFSAEEIYEMIDEADRNGDGEVDPDEFLKMMKR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain