SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene192042

Length: 161 nt

UniGene Fasta

>sp_v3.0_unigene192042
TGAAGTGTCAGTTTGCCCACGGATCTGATGAACTTCGCCCTGTTCTTCGTCACCCAAAGTATAAGACCGAAGTTTGTAAGACATTCCACACGATTGGGACTTGTCCCTATGGAAAAGATGCAGATTCATTCACGCCGAGGTGTCTCATGAGAATATTCAAA

Ace file of the UniGene sp_v3.0_unigene192042

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CCCH-type Zn-finger protein (ISS) [Ostreococcus tauri] emb\|CAL52924.1\| CCCH-type Zn-finger protein (ISS) [Ostreococcus tauri]	-	-	2.0e-12	83%
FL-Next	sp=Zinc finger CCCH domain-containing protein 14; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	72%

Source	Gene names
Sma3	At1g66810; F4N21.6; MICPUCDRAFT_9855; MICPUN_56416; OSTLU_9818; Ot03g02730; POPTRDRAFT_225328;

Source	GOs	Term	Type	e value	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	0.0	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, CCCH-type	IPR000571	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G66810.1	Zinc finger C-x8-C-x5-C-x3-H type family protein chr1:24927613-24928619 REVERSE LENGTH=310	1.0e-13	72%
RefSeq	Arabidopsis thaliana	NP_176853.1	zinc finger CCCH domain-containing protein 14 [Arabidopsis thaliana]	1.0e-13	72%
RefSeq	Populus trichocarpa	XP_002315911.1	predicted protein, partial [Populus trichocarpa]	1.0e-14	72%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q9C9N3

Fln msg: STOP codon was not found. Distance to subject end: 6 aas, your sequence is shorter than subject: 53 - 310

Fln protein: KCQFAHGSDELRPVLRHPKYKTEVCKTFHTIGTCPYGKDADSFTPRCLMRIFK

Protein Length: 54

Fln nts: TGAAGTGTCAGTTTGCCCACGGATCTGATGAACTTCGCCCTGTTCTTCGTCACCCAAAGTATAAGACCGAAGTTTGTAAGACATTCCACACGATTGGGACTTGTCCCTATGGAAAAGATGCAGATTCATTCACGCCGAGGTGTCTCATGAGAATATTCAAA

Fln Alignment:

AllPine_b_c30144___CQFAHGSDELRPVLRHPKYKTEVCKTFHTIGTCPYG
Q9C9N3________________CQFAHGIDELRPVIRHPRYKTEVCRMMVTGAMCPYG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain