SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene191987

Length: 500 nt

UniGene Fasta

>sp_v3.0_unigene191987
CTAGAAAGATCTTCTAATACGACATATTCTTTGGCTTTATCAAAGCATCGTTACCGGTTTTACGAAAGCGCAGCTTATAGTTCAGTGCAAAAATGTTTGGCGGCGGTCCATCACTCGATGACACTTTGTTCCAACTGCGTTTCGCAACGAAACAAATGGAAAGACAGGCGAAGAAAGCTGAAAAGGAAATGAACGTGCAGAAGAGCAAAGTCAAGAAGTATTTGCAACAAGGCAATATCGAAGCGGCGCAAATCTACGCCGAGAATGCTATTCGCAAGAAGAACGAAGGATTGAATTATTTGCGGTTCGCTGGAAAACTCGACGCTGTTAGTGCTCGCGTTCAAACTGCCGCGACAATGAAAGGGATCACGAAACAAATGGGCGGCGTGGTCAAGTCCCTAGAAGCTGCGATGAACTCGATGGACTTGGAAAAGGTCCAGAAAGTTATGGACAAGTTCGAGCAGCAGTTTGAAAATCTCGACGTTCATACATCGGTGATG

Ace file of the UniGene sp_v3.0_unigene191987

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	charged multivesicular body protein 1a [Xenopus laevis] sp\|Q6NUD8.1\|CHM1A_XENLA RecName: Full=Charged multivesicular body protein 1a; AltName: Full=Chromatin-modifying protein 1a; Short=CHMP1a gb\|AAH68657.1\| Chmp1a protein [Xenopus laevis]	-	-	8.96831e-44	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%

Source	Gene names
Sma3	At1g17730; At1g17730/F11A6_15; At1g73030; At1g73030/F3N23.23; CHLREDRAFT_136002; F11A6.7; F3N23.23; GSVIVT00034212001; MICPUCDRAFT_49728; MICPUN_109016; OSTLU_29213; Os06g0643300; OsI_23871; OsJ_22129; P0416A11.29; PHATRDRAFT_11901; PHATRDRAFT_31375; PHYP

Source	GOs	Term	Type	Identity
Sma3	proton-transporting ATP synthase complex, catalytic core F(1)	GO:0045261	Cellular Component	-
Sma3	hydrogen ion transporting ATP synthase activity, rotational mechanism	GO:0046933	Molecular Function	-
Sma3	proton-transporting ATPase activity, rotational mechanism	GO:0046961	Molecular Function	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	ATP synthesis coupled proton transport	GO:0015986	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Snf7	IPR005024	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G17730.1	VPS46.1, CHMP1B vacuolar protein sorting 46.1 chr1:6099210-6100153 FORWARD LENGTH=203	1.0e-38	47%
RefSeq	Arabidopsis thaliana	NP_173215.1	vacuolar protein sorting 46.1 [Arabidopsis thaliana]	1.0e-38	47%
RefSeq	Populus trichocarpa	XP_002299760.1	predicted protein [Populus trichocarpa]	2.0e-37	47%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMS6

Fln msg: Distance to subject end: 67 aas, your sequence is shorter than subject: 136 - 203

Fln protein: MFGGGPSLDDTLFQLRFATKQMERQAKKAEKEMNVQKSKVKKYLQQGNIEAAQIYAENAIRKKNEGLNYLRFAGKLDAVSARVQTAATMKGITKQMGGVVKSLEAAMNSMDLEKVQKVMDKFEQQFENLDVHTSVM

Protein Length: 137

Fln nts: CTAGAAAGATCTTCTAATACGACATATTCTTTGGCTTTATCAAAGCATCGTTACCGGTTTTACGAAAGCGCAGCTTATAGTTCAGTGCAAAA_-_ATGTTTGGCGGCGGTCCATCACTCGATGACACTTTGTTCCAACTGCGTTTCGCAACGAAACAAATGGAAAGACAGGCGAAGAAAGCTGAAAAGGAAATGAACGTGCAGAAGAGCAAAGTCAAGAAGTATTTGCAACAAGGCAATATCGAAGCGGCGCAAATCTACGCCGAGAATGCTATTCGCAAGAAGAACGAAGGATTGAATTATTTGCGGTTCGCTGGAAAACTCGACGCTGTTAGTGCTCGCGTTCAAACTGCCGCGACAATGAAAGGGATCACGAAACAAATGGGCGGCGTGGTCAAGTCCCTAGAAGCTGCGATGAACTCGATGGACTTGGAAAAGGTCCAGAAAGTTATGGACAAGTTCGAGCAGCAGTTTGAAAATCTCGACGTTCATACATCGGTGATG

Fln Alignment:

AllPine_b_c30085___MFGGGPSLDDTLFQLRFATKQMERQAKKAEKEMNVQKSKVKKYLQQGNIEAAQIYAENAIRKKNEGLNYLRFAGKLDAVSARVQTAATMKGITKQMGGVVKSLEAAMNSMDLEKVQKVMDKFEQQFENLDVHT
A9NMS6________________MGGSAEKLMNQIMDLKITSKSLQRQSRKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKHNEQLNYMRLASRLDAVVSRLDTQAKMMTINKSMTSIVKALDSALATGNLQKMSETMDQFETQFVNMEVQS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain