SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene191958

Length: 472 nt

UniGene Fasta

>sp_v3.0_unigene191958
AGCCCCTAAGGGAGCCCAGGCCAAACTTGCACAGAAAACCAATGCTAAGATCACCAGAGCCCAGCAAATCGGAACTGCGATCAGAAAGAAGCAACAGAAGAAAGTCAGCAAAGTTAGAACTTCCGTTCATTTCCACAGACCCAAGACTTTGAGACTGCCAAAGAAGCCTCTGTACCCAAGAAAGTCAGCTCCAGGAAGAATCAAGAACCACCAATACCGTATCATCAAGGCCCCCGTTGCCACTGAAACCGCGATGAAGAGAGTGGAAGACAGCAACATTTTGGTTCTGACTGTCGACCTGAAGGCCTCCAAATATCAAATCAAAAACGCTGTCAAGAAGATGTACGATGTTGATGCCGTCCGTATCAACACAAGCATTGGTGGCAACGGAGAGAAGAAGGCTTTCGTTCGTCTCCCACCCAATGTTGAAGGTTTGGAAATGGCCAGCAAAATTGGAGTCATTTAAGCGGAT

Ace file of the UniGene sp_v3.0_unigene191958

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: ribosomal protein L23a-like isoform 1 n=3 Tax=Eutheria RepID=UPI0001D56DBB	-	-	1.0e-31	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Sma3	60S ribosomal protein L23a	-	-	1.992e-10	-

Source	Gene names
Sma3	At2g39460; At3g55280; B1051E10.13; CHLREDRAFT_174711; F12L6.12; GSVIVT00018552001; H0311C03.2; MICPUCDRAFT_33613; MICPUN_91476; OSJNBa0029H02.21; Os01g0348700; Os04g0501000; OsI_01816; OsI_16517; OsI_16522; OsJ_01678; OsJ_15349; P0440D10.34; PHYPADRAFT_19

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	rRNA binding	GO:0019843	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to high light intensity	GO:0009644	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L23/L25, conserved site	IPR001014	-	-
Sma3	Ribosomal protein L23/L25, N-terminal	IPR005633	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Ribosomal protein L25/L23	IPR013025	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G55280.1	RPL23AB ribosomal protein L23AB chr3:20500667-20501519 FORWARD LENGTH=154	2.0e-37	53%
RefSeq	Arabidopsis thaliana	NP_001078294.1	60S ribosomal protein L23a-2 [Arabidopsis thaliana]	2.0e-37	53%
RefSeq	Populus trichocarpa	XP_002314202.1	predicted protein [Populus trichocarpa]	8.0e-36	53%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTI1

Fln msg: atg_distance in limit (1-15): atg_distance = 3, W2: There is no M at the beginning,

Fln protein: APKGAQAKLAQKTNAKITRAQQIGTAIRKKQQKKVSKVRTSVHFHRPKTLRLPKKPLYPRKSAPGRIKNHQYRIIKAPVATETAMKRVEDSNILVLTVDLKASKYQIKNAVKKMYDVDAVRINTSIGGNGEKKAFVRLPPNVEGLEMASKIGVI*

Protein Length: 156

Fln nts: AGCCCCTAAGGGAGCCCAGGCCAAACTTGCACAGAAAACCAATGCTAAGATCACCAGAGCCCAGCAAATCGGAACTGCGATCAGAAAGAAGCAACAGAAGAAAGTCAGCAAAGTTAGAACTTCCGTTCATTTCCACAGACCCAAGACTTTGAGACTGCCAAAGAAGCCTCTGTACCCAAGAAAGTCAGCTCCAGGAAGAATCAAGAACCACCAATACCGTATCATCAAGGCCCCCGTTGCCACTGAAACCGCGATGAAGAGAGTGGAAGACAGCAACATTTTGGTTCTGACTGTCGACCTGAAGGCCTCCAAATATCAAATCAAAAACGCTGTCAAGAAGATGTACGATGTTGATGCCGTCCGTATCAACACAAGCATTGGTGGCAACGGAGAGAAGAAGGCTTTCGTTCGTCTCCCACCCAATGTTGAAGGTTTGGAAATGGCCAGCAAAATTGGAGTCATTTAA___GCGGAT

Fln Alignment:

AllPine_b_c30053___PKGAQAKLAQKTNA-KITRAQQIGTAIXXXXXXXXXXXXXXVHFHRPKTLRLPKKPLYPRKSAPGRIKNHQYRIIKAPVATETAMKRVEDSNILVLTVDLKASKYQIKNAVKKMYDVDAVRINTSIGGNGEKKAFVRLPPNVEGLEMASKIGVI
A9NTI1________________PKGLAKKSDPKSQAQKAAKAVKAGAS---SLKRKSRKIRTSVIFHRPRTFKRPRNPKYPRISAPPRNKLDQYEVLKYPLTTESAMKKIEDNNTLVFIVDVRADKKKIKDAVKKMYDIQTKKVNTLIRPDGLKKAYVRLTPDYDALDVANKIGII

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain