SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene191616

Length: 388 nt

UniGene Fasta

>sp_v3.0_unigene191616
CACCTTTCTTTCCCATCTCGCACGTTCCACTTACAATGGCTGAGGACAACGAATTGGACACAGTGAAGCTGATTAGCGCTGATAATCACGAGTTCATTGTTGATCGTAAGGCGGCAATGGTCTCAGGAACCATCAGATCTATGTTATCTGGACCTGGCACATTTACTGAACAAGCTCTTGGTGAAATCAACTTTCGAGAGATATCTACTCCCATTTTAGAGAAAGTGATTCAATATTTTATTACAAGCTGCGCTACACCAACAGTACAACTGAAATACCCGAGTTCCCAATTGAGCCTGAAATTGCTTTGGAGCTTCTCATGGCTGCCAACTTTTTGGACACTTAATTCATACACTGTCACTATTCCTGTGAATATAGCTAGCTGCAT

Ace file of the UniGene sp_v3.0_unigene191616

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	elongation factor SIII p15 subunit, putative [Aedes aegypti] gb\|EAT43917.1\| elongation factor SIII p15 subunit, putative [Aedes aegypti]	-	-	1.0e-13	62%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	66%
Sma3	Elongin C	-	-	1.898e-09	-

Source	Gene names
Sma3	At5g59140; CHLREDRAFT_159711; OsI_37102; PHYPADRAFT_154424;

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	SKP1 component	IPR001232	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	SKP1 component, POZ	IPR016073	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G59140.1	BTB/POZ domain-containing protein chr5:23874696-23875631 REVERSE LENGTH=96	2.0e-18	59%
RefSeq	Arabidopsis thaliana	NP_568900.1	transcription elongation factor B, polypeptide 1 [Arabidopsis thaliana]	3.0e-18	59%
RefSeq	Populus trichocarpa	XP_002314149.1	predicted protein [Populus trichocarpa]	2.0e-19	60%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: A9U1S0

Fln msg: STOP codon was not found. Distance to subject end: 17 aas,

Fln protein: MAEDNELDTVKLISADNHEFIVDRKAAMVSGTIRSMLSGPGTFTEQALGEINFREISTPILEKVIQYFITSCATPTVQLKYPSSQLSLKLLWSFSWLPTFWTLNSYTVTIPVNIASC

Protein Length: 118

Fln nts: CACCTTTCTTTCCCATCTCGCACGTTCCACTTACA_-_ATGGCTGAGGACAACGAATTGGACACAGTGAAGCTGATTAGCGCTGATAATCACGAGTTCATTGTTGATCGTAAGGCGGCAATGGTCTCAGGAACCATCAGATCTATGTTATCTGGACCTGGCACATTTACTGAACAAGCTCTTGGTGAAATCAACTTTCGAGAGATATCTACTCCCATTTTAGAGAAAGTGATTCAATATTTTATTACAAGCTGCGCTACACCAACAGTACAACTGAAATACCCGAGTTCCCAATTGAGCCTGAAATTGCTTTGGAGCTTCTCATGGCTGCCAACTTTTTGGACACTTAATTCATACACTGTCACTATTCCTGTGAATATAGCTAGCTGCAT

Fln Alignment:

AllPine_b_c29677___TVKLISADNHEFIVDRKAAMVSGTIRSMLSGPGTFTEQALGEINFREISTPILEKVIQYFITS
A9U1S0________________TIKLVSAEGFEFIIDRKAAVVSNTLRNMLSSSGNFTETELGEVKFPEISTPILEKVCQYFYWS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain