SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene191545

Length: 350 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene191545
ACTTGAAATTACAAATAAATTTGGCGAGATTAATAATGATAAAGCAAAAGAATTAGGTTATGAAATTCTTGCTGGTAATGTTTGGATTGAACAAGATGTTGATATACTTATTCCAGCGGCGATGGAAAATCAAATTAATGCTGATACAGTTAATTTAATTAGTTCTACTGTTAAAGTAATTGCAGAAGGTGCAAATGGCCCAACAACGCCAGAAGCTGATGAAGTAATTAAAAGTAGGGGTATTTGGGTAATTCCTGATTTTCTTGCTAATGCTGGCGGTGTTACATGTTCATATTTCGAGCAAGTACAAAACAATATGAATTATTATTGGACTCGTGAAGAAGTATTAG

Ace file of the UniGene sp_v3.0_unigene191545 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glutamate dehydrogenase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LW88_SYNAS	-	-	1.00053e-42	71%
FL-Next	sp=Glutamate dehydrogenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%

Source	Gene names
Sma3	At3g03910; F20H23.4; GSH3; T11I18.2;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	glutamate dehydrogenase [NAD(P)+] activity	GO:0004353	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	cellular amino acid metabolic process	GO:0006520	Biological Process	-
Sma3	regulation of nitrogen compound metabolic process	GO:0051171	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glutamate/phenylalanine/leucine/valine dehydrogenase	IPR006095	-	-
Sma3	Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal	IPR006096	-	-
Sma3	Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain	IPR006097	-	-
Sma3	Glutamate dehydrogenase	IPR014362	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G03910.1	GDH3 glutamate dehydrogenase 3 chr3:1006913-1008846 FORWARD LENGTH=411	4.0e-23	51%
RefSeq	Arabidopsis thaliana	NP_187041.1	glutamate dehydrogenase (NAD(P)+) [Arabidopsis thaliana]	5.0e-23	51%
RefSeq	Populus trichocarpa	XP_002325838.1	predicted protein [Populus trichocarpa]	7.0e-21	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXM5

Fln msg: Distance to subject end: 48 aas, your sequence is shorter than subject: 116 - 411

Fln protein: LEITNKFGEINNDKAKELGYEILAGNVWIEQDVDILIPAAMENQINADTVNLISSTVKVIAEGANGPTTPEADEVIKSRGIWVIPDFLANAGGVTCSYFEQVQNNMNYYWTREEVL

Protein Length: 117

Fln nts: ACTTGAAATTACAAATAAATTTGGCGAGATTAATAATGATAAAGCAAAAGAATTAGGTTATGAAATTCTTGCTGGTAATGTTTGGATTGAACAAGATGTTGATATACTTATTCCAGCGGCGATGGAAAATCAAATTAATGCTGATACAGTTAATTTAATTAGTTCTACTGTTAAAGTAATTGCAGAAGGTGCAAATGGCCCAACAACGCCAGAAGCTGATGAAGTAATTAAAAGTAGGGGTATTTGGGTAATTCCTGATTTTCTTGCTAATGCTGGCGGTGTTACATGTTCATATTTCGAGCAAGTACAAAACAATATGAATTATTATTGGACTCGTGAAGAAGTATTAG

Fln Alignment:

AllPine_b_c29599___QDVDILIPAAMENQINADTVNLISSTVKVIAEGANGPTTPEADEVIKSRGIWVIPDFLANAGGVTCSYFEQVQNNMNYYWTREEV
A9NXM5________________EDCDVLIPAALGGVLNRENASEVKA--KFIIEAANHPTDPEADEILYKKGVIVLPDIYANSGGVTVSYFEWVQNIQGFMWDEEKV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain