SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene191260

Length: 465 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene191260
CAAAATCATCGCTCCAAAGCTGGAAGAACTGAGCAAAGTCCATACCAATGTTGTATTCTTGAAAGTGGATGTAGATGCTCTGGGAGAACTTGCTCAGGAGTACAATATCTCAGCGATGCCAACTCTCATTTTCATCAAGAGTGGCCAGGTGGCAAACACTATCGTAGGAGCCAACCTGCCCCAAATCAAGTCTGACATCGAGAAGTTCAGTGGTCAGCCAGCAGGGGCAACCGCTTGACAAGACTGTTCAGATCTGGCCAGAGATATTAGTACAGGGCGTGGTATATGTACAAAGAACGTTTTTATCGAGATTGGGGCCAGATGACTGTTTCCTGAGAACTGCTATTCTTGTTGTGGAGTCTTGTAGGCAAGACATCTGCATTGTGTTCTTCTTACTACAGACAGTGACCTGAATTGAACCAATACAGCCTGTTGCTTGCATTGTGCAATTTGCGTCTAAGACCC

Ace file of the UniGene sp_v3.0_unigene191260 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Thioredoxin n=1 Tax=Pediculus humanus corporis RepID=E0VFG1_PEDHC	-	-	1.0e-13	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002300738.1	thioredoxin h [Populus trichocarpa]	9.0e-15	48%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZI2

Fln msg: your sequence is shorter than subject: 79 - 145

Fln protein: KIIAPKLEELSKVHTNVVFLKVDVDALGELAQEYNISAMPTLIFIKSGQVANTIVGANLPQIKSDIEKFSGQPAGATA*

Protein Length: 80

Fln nts: CAAAATCATCGCTCCAAAGCTGGAAGAACTGAGCAAAGTCCATACCAATGTTGTATTCTTGAAAGTGGATGTAGATGCTCTGGGAGAACTTGCTCAGGAGTACAATATCTCAGCGATGCCAACTCTCATTTTCATCAAGAGTGGCCAGGTGGCAAACACTATCGTAGGAGCCAACCTGCCCCAAATCAAGTCTGACATCGAGAAGTTCAGTGGTCAGCCAGCAGGGGCAACCGCTTGA___CAAGACTGTTCAGATCTGGCCAGAGATATTAGTACAGGGCGTGGTATATGTACAAAGAACGTTTTTATCGAGATTGGGGCCAGATGACTGTTTCCTGAGAACTGCTATTCTTGTTGTGGAGTCTTGTAGGCAAGACATCTGCATTGTGTTCTTCTTACTACAGACAGTGACCTGAATTGAACCAATACAGCCTGTTGCTTGCATTGTGCAATTTGCGTCTAAGACCC

Fln Alignment:

AllPine_b_c29282___IIAPKLEELSKVHTNVVFLKVDVDALGELAQEYNISAMPTLIFIKSGQVANTIVGANLPQIKSDIEKFSGQPAGATA
A9NZI2________________MIAPFYTELSQKHPQLVFLKVDVDELRELSETWNVQAMPTFVFIKNGKQIDTLVGADKSELEKKVKSYATAARGRTA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain