SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene191235

Length: 206 nt

UniGene Fasta

>sp_v3.0_unigene191235
CTTGTCAGAGGTTTTGGAAGAAGAATTAAAGAGGCGAGGGCTGCAGGTCTAGCTGCAGAGGAAATGTTTGGCAAATGGAAGGGTTTGCAAGAAGTGACGAGCAATCACATGATCATTTGGCCACCGATGGTTGTGATTCAGAACACTGTTCTGGAGCAAGATGAGAAGAATATGTGGATTGGTATGGGAAACAAAGAATTGCTTGA

Ace file of the UniGene sp_v3.0_unigene191235

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein SUPPRESSOR OF GENE SILENCING 3 homolog [Zea mays] sp\|A1Y2B7.1\|SGS3_MAIZE RecName: Full=Protein SUPPRESSOR OF GENE SILENCING 3 homolog; AltName: Full=Protein LEAFBLADELESS 1; AltName: Full=ZmSGS3 gb\|ABH10613.1\| leafbladeless1 [Zea mays] gb\|ACN33294	-	-	1.0e-12	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Sma3	Protein SUPPRESSOR OF GENE SILENCING 3 homolog	-	-	9.491e-10	-

Source	Gene names
Sma3	GSVIVT00003647001; LBL1; OsI_036510; RCOM_1176800; SGS3; VITISV_043511;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	gene silencing by RNA	GO:0031047	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Lipase, GDSL	IPR001087	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Zinc finger-XS domain	IPR005381	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G23570.1	SGS3, ATSGS3 XS domain-containing protein / XS zinc finger domain-containing protein-related chr5:7943621-7945874 FORWARD LENGTH=625	2.0e-14	49%
RefSeq	Arabidopsis thaliana	NP_197747.1	protein SUPPRESSOR OF GENE SILENCING 3 [Arabidopsis thaliana]	2.0e-14	49%
RefSeq	Populus trichocarpa	XP_002303167.1	predicted protein [Populus trichocarpa]	1.0e-11	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNA2

Fln msg: Distance to subject end: 215 aas, your sequence is shorter than subject: 68 - 419

Fln protein: LVRGFGRRIKEARAAGLAAEEMFGKWKGLQEVTSNHMIIWPPMVVIQNTVLEQDEKNMWIGMGNKELL

Protein Length: 69

Fln nts: CTTGTCAGAGGTTTTGGAAGAAGAATTAAAGAGGCGAGGGCTGCAGGTCTAGCTGCAGAGGAAATGTTTGGCAAATGGAAGGGTTTGCAAGAAGTGACGAGCAATCACATGATCATTTGGCCACCGATGGTTGTGATTCAGAACACTGTTCTGGAGCAAGATGAGAAGAATATGTGGATTGGTATGGGAAACAAAGAATTGCTTGA

Fln Alignment:

AllPine_b_c29256___LVRGFGRRIKEARAAGLAAEEMFGKWKGLQEVTSNHMIIWPPMVVIQNTVLEQDEKNMWIGMGNKELL
B8LNA2________________LVKVLEEELKRRSAAGFAVQEVYGKWLSLQEGHIDSQIVWPPIVIVENTGFKLQDNQQSSGMGNKELL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain