SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene191019

Length: 498 nt

UniGene Fasta

>sp_v3.0_unigene191019
CGTTGTCCACCTCTCTGCTGGTGATCTTCTCCGTGCTGAGCGCGCCACGGGTTCGGAAGTGGCCAACCTCATCAACGATTACATCAAGAACGGCTCGATCGTCCCGGTGGAGATTACCGTCGGCCTCATCGAGAAGGCCATGAAGGAGTCGGGCAAGGACAAGTTCCTGGTGGATGGCTTCCCCCGCAATGCTGACAACCTTCAGGGATGGGAGAATGTTCTGGGCACCAAGACCGATGTGCGCTTCGTCCTCTACCTCGAGTGCCCCACGGAGACGTGCGTTGAGCGCGCTCTCGAGCGTGGCAAGACGAGCGGCCGCAACGACGACAACATTGAGACTCTCCGCAAGCGTCTCCAGACCTACGAGCAGGAGACTCGCCCCATTATCGACATCTTTGCTCAGCGCAACCTGCTGCGCACCGTGTCGTCCGTGCCCGGCGTGGACGAAGTGTACAAGGAGGTCACCAAGCTCTTCGAGGCACTGTAAATCGCAGTATG

Ace file of the UniGene sp_v3.0_unigene191019

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=UMP-CMP kinase; AltName: Full=Cytidine monophosphate kinase; AltName: Full=Cytidylate kinase; AltName: Full=Deoxycytidylate kinase; AltName: Full=Uridine monophosphate kinase; AltName: Full=Uridine monophosphate/cytidine monophosphate kinase	-	-	1.4013e-45	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Sma3	Uridylate kinase	-	-	1.639e-07	-

Source	ECs	Term	Type	e value	Identity
Sma3	Transferases, Transferring phosphorous-containing groups, Phosphotransferases with a phosphate group as acceptor.	EC:2.7.4.-	-	3.278e-08	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Drug metabolism - other enzymes	00983		3.278e-08	%

Source	Gene names
Sma3	ADK1; AT4g25280; At3g60180; At5g26667; B0616E02-H0507E05.4; F24A6.120; MICPUN_88986; OSTLU_40028; Os04g0105500; OsI_14565; OsJ_13512; Ot01g04910; PHATRDRAFT_6457; PHATRDRAFT_bd1367; PHYPADRAFT_126837; PHYPADRAFT_152695; PHYPADRAFT_220749; POPTRDRAFT_55193

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	phosphotransferase activity, phosphate group as acceptor	GO:0016776	Molecular Function	-
Sma3	nucleotide kinase activity	GO:0019201	Molecular Function	-
Sma3	nucleobase-containing compound kinase activity	GO:0019205	Molecular Function	-
Sma3	nucleobase-containing compound metabolic process	GO:0006139	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Adenylate kinase	IPR000850	-	0.0	-
Sma3	UMP-CMP kinase	IPR006266	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002302480.1	predicted protein [Populus trichocarpa]	5.00264e-43	46%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A874

Fln msg: your sequence is shorter than subject: 162 - 223

Fln protein: VVHLSAGDLLRAERATGSEVANLINDYIKNGSIVPVEITVGLIEKAMKESGKDKFLVDGFPRNADNLQGWENVLGTKTDVRFVLYLECPTETCVERALERGKTSGRNDDNIETLRKRLQTYEQETRPIIDIFAQRNLLRTVSSVPGVDEVYKEVTKLFEAL*

Protein Length: 163

Fln nts: CGTTGTCCACCTCTCTGCTGGTGATCTTCTCCGTGCTGAGCGCGCCACGGGTTCGGAAGTGGCCAACCTCATCAACGATTACATCAAGAACGGCTCGATCGTCCCGGTGGAGATTACCGTCGGCCTCATCGAGAAGGCCATGAAGGAGTCGGGCAAGGACAAGTTCCTGGTGGATGGCTTCCCCCGCAATGCTGACAACCTTCAGGGATGGGAGAATGTTCTGGGCACCAAGACCGATGTGCGCTTCGTCCTCTACCTCGAGTGCCCCACGGAGACGTGCGTTGAGCGCGCTCTCGAGCGTGGCAAGACGAGCGGCCGCAACGACGACAACATTGAGACTCTCCGCAAGCGTCTCCAGACCTACGAGCAGGAGACTCGCCCCATTATCGACATCTTTGCTCAGCGCAACCTGCTGCGCACCGTGTCGTCCGTGCCCGGCGTGGACGAAGTGTACAAGGAGGTCACCAAGCTCTTCGAGGCACTGTAA___ATCGCAGTATG

Fln Alignment:

AllPine_b_c29025___HLSAGDLLRAERATGSEVANLINDYIKNGSIVPVEITVGLIEKAMKESGKDKFLVDGFPRNADNLQGWENVLGTKTDVRFVLYLECPTETCVERALERGKTSGRNDDNIETLRKRLQTYEQETRPIIDIFAQRNLLRTVSSVPGVDEVYKEVTKLF
D5A874________________HLSAGDLLRAEIKSGSENGTMIENMIKEGKIVPSEVTVKLLQKAMQESENDKFLIDGFPRNEENRAAFENVTGIQPE--FILFFNCPEEEMLKRLLNRNQ--GRVDDNVETITKRFRVFSESSLPVVNYYDSKGKVRKIDAVKSKEDVFENIKLLF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain