SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene190990

Length: 573 nt

UniGene Fasta

>sp_v3.0_unigene190990
CTAGCAATTCCTTGCACAGATTCGTTTGTGGGTCATCAAGTGCCTTGTTCTCATGCCGCAAATGATGTGAATATTAATGATCAGAATCGTGTTTTCTTCCAACAGTTACAGCAACCGCCTAAGGAGTACGGTGAGTCACCGCCACTGAGAGAAGAACTGCCTTTGCTGCTCAGTCTCAGTCCCCCAAGAGAAAAGCGGAGTGGGGAGGAGAGGTTTAGGTCAGATCCAGAAGAAAGCGCAATGGTATCTCTGCACATAGGACCTCCTAACAGCTTATGTGAGAAGTTTGAACCCAGCTTGAAGAGTACTGATTCCAGCGATGCAGACAAGGAGAGTGTAATAGTGGAGGGCAGATCAGATGGCAGAACAAGATTTTCAGAAAGTCAGTATTGGATACCTACACCTTCACAAATTCTCATTGGGGCTACTCAGTTCTCCTGCCCAGTCTGTGCTAAGACCTTCAATCGGTATAACAACATGCAGGTATGCCCATTTAAGGACTATGTTAATTCAACTTAAGTAGGGCACCTTCAAACTCGTTGAACATCAATGAGTCTGGTCCACATTAAAACG

Ace file of the UniGene sp_v3.0_unigene190990

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TRANSPARENT TESTA 1 protein, putative n=1 Tax=Ricinus communis RepID=B9RIA2_RICCO	-	-	2.0e-17	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%

Source	Gene names
Sma3	GSVIVT00028820001; OJ1134_H03.1; OJ1225_F07.21; OJ1506_F01.33; OJ1524_D08.6; OSJNBa0020H14.18; Os01g0859100; Os05g0444200; Os06g0612300; Os09g0485500; OsI_04507; OsI_06231; OsI_23689; OsI_29790; OsI_31828; OsJ_04140; OsJ_18716; OsJ_21961; OsJ_27857; OsJ_2

Source	GOs	Term	Type	e value	Identity
Sma3	intracellular	GO:0005622	Cellular Component	0.0	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Post-SET domain	IPR003616	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002304767.1	predicted protein [Populus trichocarpa]	1.0e-20	50%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQR7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 115 aas, your sequence is shorter than subject: 93 - 225

Fln protein: MVSLHIGPPNSLCEKFEPSLKSTDSSDADKESVIVEGRSDGRTRFSESQYWIPTPSQILIGATQFSCPVCAKTFNRYNNMQVCPFKDYVNST*

Protein Length: 94

Fln nts: CTAGCAATTCCTTGCACAGATTCGTTTGTGGGTCATCAAGTGCCTTGTTCTCATGCCGCAAATGATGTGAATATTAATGATCAGAATCGTGTTTTCTTCCAACAGTTACAGCAACCGCCTAAGGAGTACGGTGAGTCACCGCCACTGAGAGAAGAACTGCCTTTGCTGCTCAGTCTCAGTCCCCCAAGAGAAAAGCGGAGTGGGGAGGAGAGGTTTAGGTCAGATCCAGAAGAAAGCGCA_-_ATGGTATCTCTGCACATAGGACCTCCTAACAGCTTATGTGAGAAGTTTGAACCCAGCTTGAAGAGTACTGATTCCAGCGATGCAGACAAGGAGAGTGTAATAGTGGAGGGCAGATCAGATGGCAGAACAAGATTTTCAGAAAGTCAGTATTGGATACCTACACCTTCACAAATTCTCATTGGGGCTACTCAGTTCTCCTGCCCAGTCTGTGCTAAGACCTTCAATCGGTATAACAACATGCAGGTATGCCCATTTAAGGACTATGTTAATTCAACTTAAGTAGGGCACCTTCAAACTCGTTGAACATCAATGAGTCTGGTCCACATTAAAACG

Fln Alignment:

AllPine_b_c28979___MVSLHIGPPNSLCEKFEPSLKSTDSSDADKESVIVEGRSDGRTRFSESQYWIPTPSQILIGATQFSCPVCAKTFNRYNNMQV
A9NQR7________________MVSLQIGPPNSLSEKSELTLKSTDSSDADKES-IVQPRSEGRTRFSESQYWIPTPSQILIGATQFSCPVCAKTFNRYNNMQM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain