SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene190979

Length: 240 nt

UniGene Fasta

>sp_v3.0_unigene190979
TGGAGGCGTTGAGGAGCTGCGGGAGAATGGAGATCACGTCTCAGAATCCGCAATGGGAGATGGAGGACATGCCCGGCCCCAGAGTCATGGGCGACATGCTCATTCTCCCCACTTCTCAGATTCTCGTAATCAACGGTGCCAAAAATGGCATGGCCGGCTGGCAATCTGCCCGGGAGCCTGCATTGAGTCCGTTTCTCTACACACCCACAGAAGCATTGGGCAACAGGTTCAGGGTCCTGG

Ace file of the UniGene sp_v3.0_unigene190979

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glyoxal oxidase-related protein [Arabidopsis thaliana] emb\|CAB41193.1\| putative protein [Arabidopsis thaliana] gb\|AEE79679.1\| glyoxal oxidase-related protein [Arabidopsis thaliana]	-	-	7.0e-18	52%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	59%

Source	ECs	Term	Type	e value	Identity
Sma3	Galactose oxidase.	EC:1.1.3.9	-	3.279e-08	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Galactose metabolism	00052		3.279e-08	%

Source	Gene names
Sma3	GSVIVT00000516001; GSVIVT00015939001; GSVIVT00028985001; GSVIVT00032445001; LOC_Os11g06870; OsI_35269; OsJ_33111; PHYPADRAFT_107573; PHYPADRAFT_144609; PHYPADRAFT_154008; PHYPADRAFT_169254; PHYPADRAFT_192018; PHYPADRAFT_202850; PHYPADRAFT_209785; PHYPADRA

Source	GOs	Term	Type	e value	Identity
Sma3	galactose oxidase activity	GO:0045480	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Glyoxal oxidase, N-terminal	IPR009880	-	-
Sma3	Immunoglobulin-like fold	IPR013783	-	-
Sma3	Domain of unknown function DUF1929	IPR015202	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G57620.1	glyoxal oxidase-related protein chr3:21337564-21339207 FORWARD LENGTH=547	4.0e-23	52%
RefSeq	Arabidopsis thaliana	NP_191321.1	glyoxal oxidase-related protein [Arabidopsis thaliana]	6.0e-23	52%
RefSeq	Populus trichocarpa	XP_002331167.1	predicted protein [Populus trichocarpa]	5.0e-26	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6GTQ6

Fln msg: Distance to subject end: 172 aas, your sequence is shorter than subject: 79 - 597

Fln protein: EALRSCGRMEITSQNPQWEMEDMPGPRVMGDMLILPTSQILVINGAKNGMAGWQSAREPALSPFLYTPTEALGNRFRVL

Protein Length: 80

Fln nts: TGGAGGCGTTGAGGAGCTGCGGGAGAATGGAGATCACGTCTCAGAATCCGCAATGGGAGATGGAGGACATGCCCGGCCCCAGAGTCATGGGCGACATGCTCATTCTCCCCACTTCTCAGATTCTCGTAATCAACGGTGCCAAAAATGGCATGGCCGGCTGGCAATCTGCCCGGGAGCCTGCATTGAGTCCGTTTCTCTACACACCCACAGAAGCATTGGGCAACAGGTTCAGGGTCCTGG

Fln Alignment:

AllPine_b_c28955___EALRSCGRMEITSQNPQWEMEDMPGPRVMGDMLILPTSQILVINGAKNGMAGWQSAREPALSPFLYTPTEALGNRFRVL
F6GTQ6________________KGLSSCGRMVITGNTHKWNMENMPGPRLLNDMLILPTGDILIINGAKRGCAGWKNAADPSLQPYLYKPKKTLGRRFSVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain